Call delete() in link.stop() ; warn on exited node.cmd()

We should think a bit about the semantics that we want here.
The comments say "stop and clean up link" so perhaps that's
what we want. However, we could also imagine stop stopping
forwarding on the link (and possibly allowing restarts).

We warn on exited node.cmd() because we terminate the controller
before stopping/deleting the links. This makes sense to avoid a
storm of link/port down events, but since the controller's
shell has exited we cannot call link.stop() on any of its
links. We may want to simply stop the controller and not
terminate it, but at least it doesn't hang for now.