From 642a3640bc5bd950c6e9f463d823644022c7c520 Mon Sep 17 00:00:00 2001
From: "Bernhard J. Berger" <bernhard.berger@uni-bremen.de>
Date: Thu, 16 Mar 2023 21:34:41 +0100
Subject: [PATCH] Moved all code that is specific to evolutionary algorithms to
core.ea. core.main keeps all the stuff that is optimiser
algorithm-independent. We still have to move some more content back to
core.main while we implement new optimisers. #19 #15
Fixed regressions with domain-specific language parsing #18. This bug was introduced by d74325cbe24bc9b8010c241906d4b79c6bc3dab6.
---
.../de.evoal.approximative.density/pom.xml | 1 +
.../ea/fitness/DensityBasedFitness.java | 8 +-
.../src/main/java/module-info.java | 1 +
src/core/de.evoal.core.arff/pom.xml | 1 +
src/core/de.evoal.core.ea/pom.xml | 78 ++++
.../de/evoal/core/ea/api}/cdi/Fitness.java | 2 +-
.../evoal/core/ea/api}/codec/CustomCodec.java | 2 +-
.../calculation/CalculationFactory.java | 14 +-
.../calculation/CalculationStrategy.java | 6 +-
.../ea/api}/constraints/model/Constraint.java | 2 +-
.../constraints/model/ConstraintResult.java | 2 +-
.../constraints/model/ConstraintType.java | 2 +-
.../api}/constraints/model/Constraints.java | 2 +-
.../constraints/model/DataConstraints.java | 2 +-
.../api}/constraints/model/package-info.java | 2 +-
.../ea/api}/constraints/package-info.java | 2 +-
.../strategies/CalculationResult.java | 4 +-
.../strategies/HandlingStrategy.java | 2 +-
.../strategies/RepairStrategy.java | 2 +-
.../fitness/MalusForFitnessStrategy.java | 8 +-
.../strategies/fitness/MalusFunction.java | 2 +-
.../fitness/internal/ChainFunction.java | 4 +-
.../fitness/internal/IdentityFunction.java | 4 +-
.../fitness/internal/package-info.java | 2 +-
.../strategies/fitness/package-info.java | 2 +-
.../ea/api}/correlations/Correlation.java | 4 +-
.../ea/api}/correlations/Correlations.java | 4 +-
.../core/ea/api}/correlations/Range.java | 2 +-
.../api}/correlations/RangedCorrelation.java | 2 +-
.../ea/api}/initial/InitialPopulation.java | 4 +-
.../de/evoal/core/ea/api}/package-info.java | 2 +-
.../core/ea/main}/alterer/AltererFactory.java | 68 +--
.../crossover/CorrelationCrossover.java | 6 +-
.../CorrelationCrossoverMemento.java | 4 +-
.../crossover/LineCorrelationCrossover.java | 4 +-
.../LineCorrelationCrossoverMemento.java | 4 +-
.../MultiPointCorrelationCrossover.java | 4 +-
...MultiPointCorrelationCrossoverMemento.java | 4 +-
.../PartiallyMatchedCorrelationCrossover.java | 4 +-
...llyMatchedCorrelationCrossoverMemento.java | 4 +-
.../SinglePointCorrelationCrossover.java | 4 +-
...inglePointCorrelationCrossoverMemento.java | 4 +-
.../UniformCorrelationCrossover.java | 4 +-
.../UniformCorrelationCrossoverMemento.java | 4 +-
.../internal/AbstractCorrelationAlterer.java | 2 +-
.../internal/CorrelationCombineAlterer.java | 6 +-
.../internal/CorrelationRecombinator.java | 2 +-
.../internal/MeanCorrelationAlterer.java | 4 +-
.../alterer/mutator/CorrelationMutator.java | 8 +-
.../mutator/CorrelationMutatorFactory.java | 4 +-
.../mutator/CorrelationMutatorMemento.java | 4 +-
.../mutator/GaussianCorrelationMutator.java | 6 +-
.../GaussianCorrelationMutatorMemento.java | 4 +-
.../SingleBitFlipCorrelationMutator.java | 4 +-
...ingleBitFlipCorrelationMutatorMemento.java | 4 +-
.../alterer/mutator/SingleBitFlipMutator.java | 2 +-
.../mutator/SwapCorrelationMutator.java | 4 +-
.../SwapCorrelationMutatorMemento.java | 4 +-
.../core/ea/main}/codec/DynamicCodec.java | 18 +-
.../ea/main}/codec/DynamicCodecProducer.java | 5 +-
.../chromosome/DynamicBitChromosome.java | 11 +-
.../DynamicBoundedDoubleChromosome.java | 2 +-
.../DynamicBoundedIntegerChromosome.java | 3 +-
.../codec/chromosome/DynamicChromosome.java | 2 +-
.../chromosome/DynamicChromosomeFactory.java | 2 +-
.../chromosome/DynamicDoubleChromosome.java | 6 +-
.../chromosome/DynamicGrayChromosome.java | 12 +-
.../chromosome/DynamicIntegerChromosome.java | 10 +-
.../chromosome/DynamicScaledChromosome.java | 2 +-
.../ea/main/comparator/ParetoComparator.java | 23 +
.../comparator/ParetoOptimisationValue.java} | 18 +-
.../constraint/ConstraintProducer.java | 16 +-
.../constraint/ast/BoundaryIdentifier.java | 8 +-
.../constraint/ast/ConditionConverter.java | 24 +-
.../ast/UnaryBoundaryIdentifier.java | 10 +-
.../calculations/NormalCalculation.java | 8 +-
.../StandardDeviationCalculation.java | 14 +-
.../JeneticsConstraintProducer.java | 26 +-
.../JeneticsConstraintStrategy.java | 16 +-
.../constraint/RandomGenotypeStrategy.java | 4 +-
.../fitness/MalusFunctionProducer.java | 24 +-
.../internal/MalusForFitnessFunction.java | 8 +-
.../utils/ArithmeticNumberOperations.java | 2 +-
.../constraint/utils/ConfigurationUtils.java | 15 +-
.../correlation/CorrelationsProducer.java | 18 +-
.../constraints/correlation/el/AstHelper.java | 7 +-
.../correlation/el/RangeSwitch.java | 6 +-
.../deviation/DeviationProducer.java | 19 +-
.../deviation/model/Deviation.java | 2 +-
.../deviation/model/Deviations.java | 2 +-
.../ea/main}/constraints/el/CallSwitch.java | 2 +-
.../constraints/el/DataReferenceSwitch.java | 2 +-
.../ea/main}/constraints/el/ElHelper.java | 2 +-
.../ea/main}/constraints/el/LogHelper.java | 2 +-
.../ea/main}/constraints/el/NumberSwitch.java | 2 +-
.../ea/main}/constraints/el/StringSwitch.java | 2 +-
.../constraints/el/ValueReferenceSwitch.java | 2 +-
.../ea/main}/fitness/DistanceFitness.java | 10 +-
.../core/ea/main}/fitness/FitnessFactory.java | 18 +-
.../fitness/JeneticsFitnessFunction.java | 6 +-
.../core/ea/main}/fitness/MalusFitness.java | 15 +-
.../initial/InitialPopulationFactory.java | 6 +-
.../initial/RandomInitialPopulation.java | 7 +-
.../core/ea/main}/initial/RandomProducer.java | 6 +-
.../jenetics/AbstractBoundedChromosome.java | 2 +-
.../core/ea}/main/jenetics/BitChromosome.java | 2 +-
.../core/ea}/main/jenetics/BitHelper.java | 2 +-
.../main/jenetics/BoundedBitChromosome.java | 2 +-
.../jenetics/BoundedDoubleChromosome.java | 2 +-
.../ea}/main/jenetics/BoundedDoubleGene.java | 2 +-
.../jenetics/BoundedIntegerChromosome.java | 3 +-
.../ea}/main/jenetics/BoundedIntegerGene.java | 2 +-
.../ea}/main/jenetics/BoundedOperations.java | 2 +-
.../core/ea/main/jenetics/ConstraintList.java | 32 ++
.../ea}/main/jenetics/DecimalFactory.java | 2 +-
.../jenetics/GrayBoundedBitChromosome.java | 2 +-
.../core/ea}/main/jenetics/GrayHelper.java | 2 +-
.../jenetics/NaiveBoundedBitChromosome.java | 2 +-
.../ea}/main/jenetics/VariableChromosome.java | 2 +-
.../main/producer/DataConstraintProducer.java | 7 +-
.../producer/OptimisingFunctionProducer.java} | 22 +-
.../PropertiesBoundariesProducer.java | 10 +-
.../ea/main}/producer/SelectorFactory.java | 2 +-
.../search/EvolutionaryAlgorithmSearch.java | 50 +-
.../ea/main/statistics/CandidateAdapter.java | 63 +++
.../statistics/IterationResultAdapter.java | 48 ++
.../statistics/JeneticsStatisticsWriter.java | 21 +
.../src/main/java/module-info.java | 49 ++
.../src/main/resources/META-INF/MANIFEST.MF | 1 +
.../src/main/resources/META-INF/beans.xml | 11 +
.../META-INF/definitions/data/constraints.dl | 13 +
.../META-INF/definitions/data/si-units.ddl | 67 +++
.../META-INF/definitions/optimisation/core.dl | 434 ++++++++++++++++++
.../evoal/core/ea/utils/LanguageHelperTest.dl | 12 +
.../evoal/core/ea/utils/LanguageHelperTest.ol | 16 +
.../core/ea/utils/regressions/generator.dl | 25 +
.../ea/utils/regressions/shekel.generator | 20 +
.../evoal/core/ea/utils/regressions/test.ddl | 3 +
src/core/de.evoal.core.junit/pom.xml | 1 +
.../core/junit/dsl/NoOpBuiltinProvider.java | 14 +
.../src/main/java/module-info.java | 3 +
src/core/de.evoal.core.main/pom.xml | 43 --
src/core/de.evoal.core.main/scripts/paths.env | 6 +-
.../core/api/ea/fitness/FitnessDecorator.java | 19 -
.../core/api/ea/fitness/FitnessFunction.java | 21 -
.../fitness/comparator/FitnessComparator.java | 25 -
.../ea/fitness/comparator/FitnessValue.java | 11 -
.../core/api/ea/fitness/package-info.java | 4 -
.../OptimisationAlgorithm.java | 4 +-
.../optimisation/OptimisationFunction.java | 16 +
.../OptimisationFunctionDecorator.java | 19 +
.../api/optimisation/OptimisationValue.java | 11 +
.../OptimisationValueComparator.java | 34 ++
.../properties/PropertiesSpecification.java | 2 -
.../evoal/core/api/statistics/Candidate.java | 30 ++
.../core/api/statistics/IterationResult.java | 30 ++
.../core/api/statistics/{ => io}/Writer.java | 2 +-
.../statistics/{ => io}/WriterException.java | 2 +-
.../statistics/{ => io}/WriterStrategy.java | 5 +-
.../core/api/statistics/package-info.java | 4 +-
.../AbstractCandidateStatisticsWriter.java | 59 +++
.../api/statistics/{ => writer}/Column.java | 2 +-
.../statistics/{ => writer}/ColumnType.java | 2 +-
.../{ => writer}/StatisticsWriter.java | 17 +-
.../{ => writer}/WriterContext.java | 2 +-
.../main/java/de/evoal/core/main/Evoal.java | 36 +-
.../comparator/WeightedSumComparator.java | 15 +-
.../WeightedSumOptimisationValue.java} | 18 +-
.../main/ea/comparator/ParetoComparator.java | 23 -
.../core/main/jenetics/ConstraintList.java | 32 --
.../main/language/ModuleBuiltinProvider.java | 69 ++-
.../producer/ConfigurationValueProducer.java | 14 +
.../main/producer/SpecificationProducer.java | 6 +-
.../search/HeuristicSearchEvaluation.java | 23 +-
.../core/main/search/HeuristicSearchMain.java | 7 +-
.../main/search/HeuristicSearchUtils.java | 8 +-
.../main/statistics/StatisticsFactory.java | 8 +-
.../statistics/fitness/FitnessStatistics.java | 60 +--
.../fitness/OptimisingStatistics.java | 66 +++
.../fitness/OptimizingStatistics.java | 104 -----
.../individuals/IndividualStatistics.java | 69 +--
.../internal/MultipleStatisticsWriter.java | 9 +-
.../{writer => io}/csv/CsvStrategy.java | 10 +-
.../{writer => io}/csv/CsvWriter.java | 10 +-
.../main/statistics/nop/NopStatistics.java | 7 +-
.../src/main/java/module-info.java | 55 +--
.../META-INF/definitions/data/constraints.dl | 13 +
.../META-INF/definitions/optimisation/core.dl | 213 ++++-----
.../utils/LanguageHelperRegressionTest.java | 102 ++++
.../api/utils/LanguageHelperUnitTest.java | 182 ++++++++
.../core/api/utils/regressions/generator.dl | 25 +
.../api/utils/regressions/shekel.generator | 20 +
.../evoal/core/api/utils/regressions/test.ddl | 3 +
src/core/de.evoal.generator.main/pom.xml | 1 +
.../generator/main.dl | 8 +-
src/core/de.evoal.releng.parent/pom.xml | 2 +
src/core/de.evoal.surrogate.api/pom.xml | 16 +
.../api/function/SurrogateFunction.java | 2 +-
.../main/ea/SurrogateFitnessFunction.java | 7 +-
.../main/ea/TrainingInitialPopulation.java | 4 +-
.../surrogate/main/ea/TrainingProducer.java | 6 +-
.../main/ea/TrainingRepairStrategy.java | 4 +-
.../main/gof/rmse/RMSECalculator.java | 2 +-
.../main/gof/rmse/RRSECalculator.java | 3 +-
.../constraint/ConstraintStatistics.java | 56 +--
.../GenerationStatisticsWriter.java | 56 ++-
.../ranged/GenerationStatisticsWriter.java | 59 ++-
.../main/statistics/ranged/Hypercube.java | 2 +-
.../statistics/ranged/HypercubeBuilder.java | 2 +-
.../main/statistics/ranged/PropertyRange.java | 3 +-
.../surrogate/SurrogateStatistics.java | 68 +--
.../src/main/java/module-info.java | 1 +
.../neural/NeuralNetworkConfigurator.java | 2 +-
src/core/de.evoal.surrogate.simple/pom.xml | 1 +
src/core/de.evoal.surrogate.svr/pom.xml | 1 +
215 files changed, 2346 insertions(+), 1266 deletions(-)
create mode 100644 src/core/de.evoal.core.ea/pom.xml
rename src/core/{de.evoal.core.main/src/main/java/de/evoal/core/api/ea => de.evoal.core.ea/src/main/java/de/evoal/core/ea/api}/cdi/Fitness.java (91%)
rename src/core/{de.evoal.core.main/src/main/java/de/evoal/core/api/ea => de.evoal.core.ea/src/main/java/de/evoal/core/ea/api}/codec/CustomCodec.java (93%)
rename src/core/{de.evoal.core.main/src/main/java/de/evoal/core/api/ea => de.evoal.core.ea/src/main/java/de/evoal/core/ea/api}/constraints/calculation/CalculationFactory.java (77%)
rename src/core/{de.evoal.core.main/src/main/java/de/evoal/core/api/ea => de.evoal.core.ea/src/main/java/de/evoal/core/ea/api}/constraints/calculation/CalculationStrategy.java (85%)
rename src/core/{de.evoal.core.main/src/main/java/de/evoal/core/api/ea => de.evoal.core.ea/src/main/java/de/evoal/core/ea/api}/constraints/model/Constraint.java (96%)
rename src/core/{de.evoal.core.main/src/main/java/de/evoal/core/api/ea => de.evoal.core.ea/src/main/java/de/evoal/core/ea/api}/constraints/model/ConstraintResult.java (93%)
rename src/core/{de.evoal.core.main/src/main/java/de/evoal/core/api/ea => de.evoal.core.ea/src/main/java/de/evoal/core/ea/api}/constraints/model/ConstraintType.java (78%)
rename src/core/{de.evoal.core.main/src/main/java/de/evoal/core/api/ea => de.evoal.core.ea/src/main/java/de/evoal/core/ea/api}/constraints/model/Constraints.java (94%)
rename src/core/{de.evoal.core.main/src/main/java/de/evoal/core/api/ea => de.evoal.core.ea/src/main/java/de/evoal/core/ea/api}/constraints/model/DataConstraints.java (97%)
rename src/core/{de.evoal.core.main/src/main/java/de/evoal/core/api/ea => de.evoal.core.ea/src/main/java/de/evoal/core/ea/api}/constraints/model/package-info.java (62%)
rename src/core/{de.evoal.core.main/src/main/java/de/evoal/core/api/ea => de.evoal.core.ea/src/main/java/de/evoal/core/ea/api}/constraints/package-info.java (72%)
rename src/core/{de.evoal.core.main/src/main/java/de/evoal/core/api/ea => de.evoal.core.ea/src/main/java/de/evoal/core/ea/api}/constraints/strategies/CalculationResult.java (89%)
rename src/core/{de.evoal.core.main/src/main/java/de/evoal/core/api/ea => de.evoal.core.ea/src/main/java/de/evoal/core/ea/api}/constraints/strategies/HandlingStrategy.java (76%)
rename src/core/{de.evoal.core.main/src/main/java/de/evoal/core/api/ea => de.evoal.core.ea/src/main/java/de/evoal/core/ea/api}/constraints/strategies/RepairStrategy.java (88%)
rename src/core/{de.evoal.core.main/src/main/java/de/evoal/core/api/ea => de.evoal.core.ea/src/main/java/de/evoal/core/ea/api}/constraints/strategies/fitness/MalusForFitnessStrategy.java (85%)
rename src/core/{de.evoal.core.main/src/main/java/de/evoal/core/api/ea => de.evoal.core.ea/src/main/java/de/evoal/core/ea/api}/constraints/strategies/fitness/MalusFunction.java (89%)
rename src/core/{de.evoal.core.main/src/main/java/de/evoal/core/api/ea => de.evoal.core.ea/src/main/java/de/evoal/core/ea/api}/constraints/strategies/fitness/internal/ChainFunction.java (84%)
rename src/core/{de.evoal.core.main/src/main/java/de/evoal/core/api/ea => de.evoal.core.ea/src/main/java/de/evoal/core/ea/api}/constraints/strategies/fitness/internal/IdentityFunction.java (69%)
rename src/core/{de.evoal.core.main/src/main/java/de/evoal/core/api/ea => de.evoal.core.ea/src/main/java/de/evoal/core/ea/api}/constraints/strategies/fitness/internal/package-info.java (54%)
rename src/core/{de.evoal.core.main/src/main/java/de/evoal/core/api/ea => de.evoal.core.ea/src/main/java/de/evoal/core/ea/api}/constraints/strategies/fitness/package-info.java (81%)
rename src/core/{de.evoal.core.main/src/main/java/de/evoal/core/api/ea => de.evoal.core.ea/src/main/java/de/evoal/core/ea/api}/correlations/Correlation.java (89%)
rename src/core/{de.evoal.core.main/src/main/java/de/evoal/core/api/ea => de.evoal.core.ea/src/main/java/de/evoal/core/ea/api}/correlations/Correlations.java (95%)
rename src/core/{de.evoal.core.main/src/main/java/de/evoal/core/api/ea => de.evoal.core.ea/src/main/java/de/evoal/core/ea/api}/correlations/Range.java (88%)
rename src/core/{de.evoal.core.main/src/main/java/de/evoal/core/api/ea => de.evoal.core.ea/src/main/java/de/evoal/core/ea/api}/correlations/RangedCorrelation.java (95%)
rename src/core/{de.evoal.core.main/src/main/java/de/evoal/core/api/ea => de.evoal.core.ea/src/main/java/de/evoal/core/ea/api}/initial/InitialPopulation.java (83%)
rename src/core/{de.evoal.core.main/src/main/java/de/evoal/core/api/ea => de.evoal.core.ea/src/main/java/de/evoal/core/ea/api}/package-info.java (75%)
rename src/core/{de.evoal.core.main/src/main/java/de/evoal/core/main/ea => de.evoal.core.ea/src/main/java/de/evoal/core/ea/main}/alterer/AltererFactory.java (61%)
rename src/core/{de.evoal.core.main/src/main/java/de/evoal/core/main/ea => de.evoal.core.ea/src/main/java/de/evoal/core/ea/main}/alterer/crossover/CorrelationCrossover.java (95%)
rename src/core/{de.evoal.core.main/src/main/java/de/evoal/core/main/ea => de.evoal.core.ea/src/main/java/de/evoal/core/ea/main}/alterer/crossover/CorrelationCrossoverMemento.java (71%)
rename src/core/{de.evoal.core.main/src/main/java/de/evoal/core/main/ea => de.evoal.core.ea/src/main/java/de/evoal/core/ea/main}/alterer/crossover/LineCorrelationCrossover.java (96%)
rename src/core/{de.evoal.core.main/src/main/java/de/evoal/core/main/ea => de.evoal.core.ea/src/main/java/de/evoal/core/ea/main}/alterer/crossover/LineCorrelationCrossoverMemento.java (87%)
rename src/core/{de.evoal.core.main/src/main/java/de/evoal/core/main/ea => de.evoal.core.ea/src/main/java/de/evoal/core/ea/main}/alterer/crossover/MultiPointCorrelationCrossover.java (97%)
rename src/core/{de.evoal.core.main/src/main/java/de/evoal/core/main/ea => de.evoal.core.ea/src/main/java/de/evoal/core/ea/main}/alterer/crossover/MultiPointCorrelationCrossoverMemento.java (89%)
rename src/core/{de.evoal.core.main/src/main/java/de/evoal/core/main/ea => de.evoal.core.ea/src/main/java/de/evoal/core/ea/main}/alterer/crossover/PartiallyMatchedCorrelationCrossover.java (95%)
rename src/core/{de.evoal.core.main/src/main/java/de/evoal/core/main/ea => de.evoal.core.ea/src/main/java/de/evoal/core/ea/main}/alterer/crossover/PartiallyMatchedCorrelationCrossoverMemento.java (87%)
rename src/core/{de.evoal.core.main/src/main/java/de/evoal/core/main/ea => de.evoal.core.ea/src/main/java/de/evoal/core/ea/main}/alterer/crossover/SinglePointCorrelationCrossover.java (94%)
rename src/core/{de.evoal.core.main/src/main/java/de/evoal/core/main/ea => de.evoal.core.ea/src/main/java/de/evoal/core/ea/main}/alterer/crossover/SinglePointCorrelationCrossoverMemento.java (94%)
rename src/core/{de.evoal.core.main/src/main/java/de/evoal/core/main/ea => de.evoal.core.ea/src/main/java/de/evoal/core/ea/main}/alterer/crossover/UniformCorrelationCrossover.java (95%)
rename src/core/{de.evoal.core.main/src/main/java/de/evoal/core/main/ea => de.evoal.core.ea/src/main/java/de/evoal/core/ea/main}/alterer/crossover/UniformCorrelationCrossoverMemento.java (95%)
rename src/core/{de.evoal.core.main/src/main/java/de/evoal/core/main/ea => de.evoal.core.ea/src/main/java/de/evoal/core/ea/main}/alterer/internal/AbstractCorrelationAlterer.java (92%)
rename src/core/{de.evoal.core.main/src/main/java/de/evoal/core/main/ea => de.evoal.core.ea/src/main/java/de/evoal/core/ea/main}/alterer/internal/CorrelationCombineAlterer.java (96%)
rename src/core/{de.evoal.core.main/src/main/java/de/evoal/core/main/ea => de.evoal.core.ea/src/main/java/de/evoal/core/ea/main}/alterer/internal/CorrelationRecombinator.java (98%)
rename src/core/{de.evoal.core.main/src/main/java/de/evoal/core/main/ea => de.evoal.core.ea/src/main/java/de/evoal/core/ea/main}/alterer/internal/MeanCorrelationAlterer.java (89%)
rename src/core/{de.evoal.core.main/src/main/java/de/evoal/core/main/ea => de.evoal.core.ea/src/main/java/de/evoal/core/ea/main}/alterer/mutator/CorrelationMutator.java (97%)
rename src/core/{de.evoal.core.main/src/main/java/de/evoal/core/main/ea => de.evoal.core.ea/src/main/java/de/evoal/core/ea/main}/alterer/mutator/CorrelationMutatorFactory.java (87%)
rename src/core/{de.evoal.core.main/src/main/java/de/evoal/core/main/ea => de.evoal.core.ea/src/main/java/de/evoal/core/ea/main}/alterer/mutator/CorrelationMutatorMemento.java (70%)
rename src/core/{de.evoal.core.main/src/main/java/de/evoal/core/main/ea => de.evoal.core.ea/src/main/java/de/evoal/core/ea/main}/alterer/mutator/GaussianCorrelationMutator.java (90%)
rename src/core/{de.evoal.core.main/src/main/java/de/evoal/core/main/ea => de.evoal.core.ea/src/main/java/de/evoal/core/ea/main}/alterer/mutator/GaussianCorrelationMutatorMemento.java (91%)
rename src/core/{de.evoal.core.main/src/main/java/de/evoal/core/main/ea => de.evoal.core.ea/src/main/java/de/evoal/core/ea/main}/alterer/mutator/SingleBitFlipCorrelationMutator.java (97%)
rename src/core/{de.evoal.core.main/src/main/java/de/evoal/core/main/ea => de.evoal.core.ea/src/main/java/de/evoal/core/ea/main}/alterer/mutator/SingleBitFlipCorrelationMutatorMemento.java (96%)
rename src/core/{de.evoal.core.main/src/main/java/de/evoal/core/main/ea => de.evoal.core.ea/src/main/java/de/evoal/core/ea/main}/alterer/mutator/SingleBitFlipMutator.java (96%)
rename src/core/{de.evoal.core.main/src/main/java/de/evoal/core/main/ea => de.evoal.core.ea/src/main/java/de/evoal/core/ea/main}/alterer/mutator/SwapCorrelationMutator.java (94%)
rename src/core/{de.evoal.core.main/src/main/java/de/evoal/core/main/ea => de.evoal.core.ea/src/main/java/de/evoal/core/ea/main}/alterer/mutator/SwapCorrelationMutatorMemento.java (87%)
rename src/core/{de.evoal.core.main/src/main/java/de/evoal/core/main/ea => de.evoal.core.ea/src/main/java/de/evoal/core/ea/main}/codec/DynamicCodec.java (82%)
rename src/core/{de.evoal.core.main/src/main/java/de/evoal/core/main/ea => de.evoal.core.ea/src/main/java/de/evoal/core/ea/main}/codec/DynamicCodecProducer.java (78%)
rename src/core/{de.evoal.core.main/src/main/java/de/evoal/core/main/ea => de.evoal.core.ea/src/main/java/de/evoal/core/ea/main}/codec/chromosome/DynamicBitChromosome.java (75%)
rename src/core/{de.evoal.core.main/src/main/java/de/evoal/core/main/ea => de.evoal.core.ea/src/main/java/de/evoal/core/ea/main}/codec/chromosome/DynamicBoundedDoubleChromosome.java (95%)
rename src/core/{de.evoal.core.main/src/main/java/de/evoal/core/main/ea => de.evoal.core.ea/src/main/java/de/evoal/core/ea/main}/codec/chromosome/DynamicBoundedIntegerChromosome.java (92%)
rename src/core/{de.evoal.core.main/src/main/java/de/evoal/core/main/ea => de.evoal.core.ea/src/main/java/de/evoal/core/ea/main}/codec/chromosome/DynamicChromosome.java (97%)
rename src/core/{de.evoal.core.main/src/main/java/de/evoal/core/main/ea => de.evoal.core.ea/src/main/java/de/evoal/core/ea/main}/codec/chromosome/DynamicChromosomeFactory.java (91%)
rename src/core/{de.evoal.core.main/src/main/java/de/evoal/core/main/ea => de.evoal.core.ea/src/main/java/de/evoal/core/ea/main}/codec/chromosome/DynamicDoubleChromosome.java (91%)
rename src/core/{de.evoal.core.main/src/main/java/de/evoal/core/main/ea => de.evoal.core.ea/src/main/java/de/evoal/core/ea/main}/codec/chromosome/DynamicGrayChromosome.java (75%)
rename src/core/{de.evoal.core.main/src/main/java/de/evoal/core/main/ea => de.evoal.core.ea/src/main/java/de/evoal/core/ea/main}/codec/chromosome/DynamicIntegerChromosome.java (82%)
rename src/core/{de.evoal.core.main/src/main/java/de/evoal/core/main/ea => de.evoal.core.ea/src/main/java/de/evoal/core/ea/main}/codec/chromosome/DynamicScaledChromosome.java (95%)
create mode 100644 src/core/de.evoal.core.ea/src/main/java/de/evoal/core/ea/main/comparator/ParetoComparator.java
rename src/core/{de.evoal.core.main/src/main/java/de/evoal/core/main/ea/comparator/ParetoFitnessValue.java => de.evoal.core.ea/src/main/java/de/evoal/core/ea/main/comparator/ParetoOptimisationValue.java} (64%)
rename src/core/{de.evoal.core.main/src/main/java/de/evoal/core/main/ea => de.evoal.core.ea/src/main/java/de/evoal/core/ea/main}/constraints/constraint/ConstraintProducer.java (87%)
rename src/core/{de.evoal.core.main/src/main/java/de/evoal/core/main/ea => de.evoal.core.ea/src/main/java/de/evoal/core/ea/main}/constraints/constraint/ast/BoundaryIdentifier.java (91%)
rename src/core/{de.evoal.core.main/src/main/java/de/evoal/core/main/ea => de.evoal.core.ea/src/main/java/de/evoal/core/ea/main}/constraints/constraint/ast/ConditionConverter.java (88%)
rename src/core/{de.evoal.core.main/src/main/java/de/evoal/core/main/ea => de.evoal.core.ea/src/main/java/de/evoal/core/ea/main}/constraints/constraint/ast/UnaryBoundaryIdentifier.java (93%)
rename src/core/{de.evoal.core.main/src/main/java/de/evoal/core/main/ea => de.evoal.core.ea/src/main/java/de/evoal/core/ea/main}/constraints/constraint/strategies/calculations/NormalCalculation.java (75%)
rename src/core/{de.evoal.core.main/src/main/java/de/evoal/core/main/ea => de.evoal.core.ea/src/main/java/de/evoal/core/ea/main}/constraints/constraint/strategies/calculations/StandardDeviationCalculation.java (90%)
rename src/core/{de.evoal.core.main/src/main/java/de/evoal/core/main/ea => de.evoal.core.ea/src/main/java/de/evoal/core/ea/main}/constraints/constraint/strategies/constraint/JeneticsConstraintProducer.java (71%)
rename src/core/{de.evoal.core.main/src/main/java/de/evoal/core/main/ea => de.evoal.core.ea/src/main/java/de/evoal/core/ea/main}/constraints/constraint/strategies/constraint/JeneticsConstraintStrategy.java (70%)
rename src/core/{de.evoal.core.main/src/main/java/de/evoal/core/main/ea => de.evoal.core.ea/src/main/java/de/evoal/core/ea/main}/constraints/constraint/strategies/constraint/RandomGenotypeStrategy.java (84%)
rename src/core/{de.evoal.core.main/src/main/java/de/evoal/core/main/ea => de.evoal.core.ea/src/main/java/de/evoal/core/ea/main}/constraints/constraint/strategies/fitness/MalusFunctionProducer.java (88%)
rename src/core/{de.evoal.core.main/src/main/java/de/evoal/core/main/ea => de.evoal.core.ea/src/main/java/de/evoal/core/ea/main}/constraints/constraint/strategies/fitness/internal/MalusForFitnessFunction.java (77%)
rename src/core/{de.evoal.core.main/src/main/java/de/evoal/core/main/ea => de.evoal.core.ea/src/main/java/de/evoal/core/ea/main}/constraints/constraint/utils/ArithmeticNumberOperations.java (98%)
rename src/core/{de.evoal.core.main/src/main/java/de/evoal/core/main/ea => de.evoal.core.ea/src/main/java/de/evoal/core/ea/main}/constraints/constraint/utils/ConfigurationUtils.java (73%)
rename src/core/{de.evoal.core.main/src/main/java/de/evoal/core/main/ea => de.evoal.core.ea/src/main/java/de/evoal/core/ea/main}/constraints/correlation/CorrelationsProducer.java (87%)
rename src/core/{de.evoal.core.main/src/main/java/de/evoal/core/main/ea => de.evoal.core.ea/src/main/java/de/evoal/core/ea/main}/constraints/correlation/el/AstHelper.java (73%)
rename src/core/{de.evoal.core.main/src/main/java/de/evoal/core/main/ea => de.evoal.core.ea/src/main/java/de/evoal/core/ea/main}/constraints/correlation/el/RangeSwitch.java (96%)
rename src/core/{de.evoal.core.main/src/main/java/de/evoal/core/main/ea => de.evoal.core.ea/src/main/java/de/evoal/core/ea/main}/constraints/deviation/DeviationProducer.java (81%)
rename src/core/{de.evoal.core.main/src/main/java/de/evoal/core/main/ea => de.evoal.core.ea/src/main/java/de/evoal/core/ea/main}/constraints/deviation/model/Deviation.java (86%)
rename src/core/{de.evoal.core.main/src/main/java/de/evoal/core/main/ea => de.evoal.core.ea/src/main/java/de/evoal/core/ea/main}/constraints/deviation/model/Deviations.java (94%)
rename src/core/{de.evoal.core.main/src/main/java/de/evoal/core/main/ea => de.evoal.core.ea/src/main/java/de/evoal/core/ea/main}/constraints/el/CallSwitch.java (98%)
rename src/core/{de.evoal.core.main/src/main/java/de/evoal/core/main/ea => de.evoal.core.ea/src/main/java/de/evoal/core/ea/main}/constraints/el/DataReferenceSwitch.java (98%)
rename src/core/{de.evoal.core.main/src/main/java/de/evoal/core/main/ea => de.evoal.core.ea/src/main/java/de/evoal/core/ea/main}/constraints/el/ElHelper.java (94%)
rename src/core/{de.evoal.core.main/src/main/java/de/evoal/core/main/ea => de.evoal.core.ea/src/main/java/de/evoal/core/ea/main}/constraints/el/LogHelper.java (94%)
rename src/core/{de.evoal.core.main/src/main/java/de/evoal/core/main/ea => de.evoal.core.ea/src/main/java/de/evoal/core/ea/main}/constraints/el/NumberSwitch.java (98%)
rename src/core/{de.evoal.core.main/src/main/java/de/evoal/core/main/ea => de.evoal.core.ea/src/main/java/de/evoal/core/ea/main}/constraints/el/StringSwitch.java (98%)
rename src/core/{de.evoal.core.main/src/main/java/de/evoal/core/main/ea => de.evoal.core.ea/src/main/java/de/evoal/core/ea/main}/constraints/el/ValueReferenceSwitch.java (98%)
rename src/core/{de.evoal.core.main/src/main/java/de/evoal/core/main/ea => de.evoal.core.ea/src/main/java/de/evoal/core/ea/main}/fitness/DistanceFitness.java (91%)
rename src/core/{de.evoal.core.main/src/main/java/de/evoal/core/main/ea => de.evoal.core.ea/src/main/java/de/evoal/core/ea/main}/fitness/FitnessFactory.java (72%)
rename src/core/{de.evoal.core.main/src/main/java/de/evoal/core/main/ea => de.evoal.core.ea/src/main/java/de/evoal/core/ea/main}/fitness/JeneticsFitnessFunction.java (55%)
rename src/core/{de.evoal.core.main/src/main/java/de/evoal/core/main/ea => de.evoal.core.ea/src/main/java/de/evoal/core/ea/main}/fitness/MalusFitness.java (60%)
rename src/core/{de.evoal.core.main/src/main/java/de/evoal/core/main/ea => de.evoal.core.ea/src/main/java/de/evoal/core/ea/main}/initial/InitialPopulationFactory.java (86%)
rename src/core/{de.evoal.core.main/src/main/java/de/evoal/core/main/ea => de.evoal.core.ea/src/main/java/de/evoal/core/ea/main}/initial/RandomInitialPopulation.java (77%)
rename src/core/{de.evoal.core.main/src/main/java/de/evoal/core/main/ea => de.evoal.core.ea/src/main/java/de/evoal/core/ea/main}/initial/RandomProducer.java (85%)
rename src/core/{de.evoal.core.main/src/main/java/de/evoal/core => de.evoal.core.ea/src/main/java/de/evoal/core/ea}/main/jenetics/AbstractBoundedChromosome.java (98%)
rename src/core/{de.evoal.core.main/src/main/java/de/evoal/core => de.evoal.core.ea/src/main/java/de/evoal/core/ea}/main/jenetics/BitChromosome.java (99%)
rename src/core/{de.evoal.core.main/src/main/java/de/evoal/core => de.evoal.core.ea/src/main/java/de/evoal/core/ea}/main/jenetics/BitHelper.java (97%)
rename src/core/{de.evoal.core.main/src/main/java/de/evoal/core => de.evoal.core.ea/src/main/java/de/evoal/core/ea}/main/jenetics/BoundedBitChromosome.java (96%)
rename src/core/{de.evoal.core.main/src/main/java/de/evoal/core => de.evoal.core.ea/src/main/java/de/evoal/core/ea}/main/jenetics/BoundedDoubleChromosome.java (99%)
rename src/core/{de.evoal.core.main/src/main/java/de/evoal/core => de.evoal.core.ea/src/main/java/de/evoal/core/ea}/main/jenetics/BoundedDoubleGene.java (99%)
rename src/core/{de.evoal.core.main/src/main/java/de/evoal/core => de.evoal.core.ea/src/main/java/de/evoal/core/ea}/main/jenetics/BoundedIntegerChromosome.java (99%)
rename src/core/{de.evoal.core.main/src/main/java/de/evoal/core => de.evoal.core.ea/src/main/java/de/evoal/core/ea}/main/jenetics/BoundedIntegerGene.java (99%)
rename src/core/{de.evoal.core.main/src/main/java/de/evoal/core => de.evoal.core.ea/src/main/java/de/evoal/core/ea}/main/jenetics/BoundedOperations.java (95%)
create mode 100644 src/core/de.evoal.core.ea/src/main/java/de/evoal/core/ea/main/jenetics/ConstraintList.java
rename src/core/{de.evoal.core.main/src/main/java/de/evoal/core => de.evoal.core.ea/src/main/java/de/evoal/core/ea}/main/jenetics/DecimalFactory.java (92%)
rename src/core/{de.evoal.core.main/src/main/java/de/evoal/core => de.evoal.core.ea/src/main/java/de/evoal/core/ea}/main/jenetics/GrayBoundedBitChromosome.java (97%)
rename src/core/{de.evoal.core.main/src/main/java/de/evoal/core => de.evoal.core.ea/src/main/java/de/evoal/core/ea}/main/jenetics/GrayHelper.java (96%)
rename src/core/{de.evoal.core.main/src/main/java/de/evoal/core => de.evoal.core.ea/src/main/java/de/evoal/core/ea}/main/jenetics/NaiveBoundedBitChromosome.java (97%)
rename src/core/{de.evoal.core.main/src/main/java/de/evoal/core => de.evoal.core.ea/src/main/java/de/evoal/core/ea}/main/jenetics/VariableChromosome.java (98%)
rename src/core/{de.evoal.core.main/src/main/java/de/evoal/core => de.evoal.core.ea/src/main/java/de/evoal/core/ea}/main/producer/DataConstraintProducer.java (92%)
rename src/core/{de.evoal.core.main/src/main/java/de/evoal/core/main/ea/producer/OptimizingFunctionProducer.java => de.evoal.core.ea/src/main/java/de/evoal/core/ea/main/producer/OptimisingFunctionProducer.java} (76%)
rename src/core/{de.evoal.core.main/src/main/java/de/evoal/core => de.evoal.core.ea/src/main/java/de/evoal/core/ea}/main/producer/PropertiesBoundariesProducer.java (72%)
rename src/core/{de.evoal.core.main/src/main/java/de/evoal/core/main/ea => de.evoal.core.ea/src/main/java/de/evoal/core/ea/main}/producer/SelectorFactory.java (99%)
rename src/core/{de.evoal.core.main/src/main/java/de/evoal/core/main/ea => de.evoal.core.ea/src/main/java/de/evoal/core/ea/main}/search/EvolutionaryAlgorithmSearch.java (71%)
create mode 100644 src/core/de.evoal.core.ea/src/main/java/de/evoal/core/ea/main/statistics/CandidateAdapter.java
create mode 100644 src/core/de.evoal.core.ea/src/main/java/de/evoal/core/ea/main/statistics/IterationResultAdapter.java
create mode 100644 src/core/de.evoal.core.ea/src/main/java/de/evoal/core/ea/main/statistics/JeneticsStatisticsWriter.java
create mode 100644 src/core/de.evoal.core.ea/src/main/java/module-info.java
create mode 100644 src/core/de.evoal.core.ea/src/main/resources/META-INF/MANIFEST.MF
create mode 100644 src/core/de.evoal.core.ea/src/main/resources/META-INF/beans.xml
create mode 100644 src/core/de.evoal.core.ea/src/main/resources/META-INF/definitions/data/constraints.dl
create mode 100644 src/core/de.evoal.core.ea/src/main/resources/META-INF/definitions/data/si-units.ddl
create mode 100644 src/core/de.evoal.core.ea/src/main/resources/META-INF/definitions/optimisation/core.dl
create mode 100644 src/core/de.evoal.core.ea/src/test/resources/de/evoal/core/ea/utils/LanguageHelperTest.dl
create mode 100644 src/core/de.evoal.core.ea/src/test/resources/de/evoal/core/ea/utils/LanguageHelperTest.ol
create mode 100644 src/core/de.evoal.core.ea/src/test/resources/de/evoal/core/ea/utils/regressions/generator.dl
create mode 100644 src/core/de.evoal.core.ea/src/test/resources/de/evoal/core/ea/utils/regressions/shekel.generator
create mode 100644 src/core/de.evoal.core.ea/src/test/resources/de/evoal/core/ea/utils/regressions/test.ddl
create mode 100644 src/core/de.evoal.core.junit/src/main/java/de/evoal/core/junit/dsl/NoOpBuiltinProvider.java
delete mode 100644 src/core/de.evoal.core.main/src/main/java/de/evoal/core/api/ea/fitness/FitnessDecorator.java
delete mode 100644 src/core/de.evoal.core.main/src/main/java/de/evoal/core/api/ea/fitness/FitnessFunction.java
delete mode 100644 src/core/de.evoal.core.main/src/main/java/de/evoal/core/api/ea/fitness/comparator/FitnessComparator.java
delete mode 100644 src/core/de.evoal.core.main/src/main/java/de/evoal/core/api/ea/fitness/comparator/FitnessValue.java
delete mode 100644 src/core/de.evoal.core.main/src/main/java/de/evoal/core/api/ea/fitness/package-info.java
rename src/core/de.evoal.core.main/src/main/java/de/evoal/core/api/{search => optimisation}/OptimisationAlgorithm.java (85%)
create mode 100644 src/core/de.evoal.core.main/src/main/java/de/evoal/core/api/optimisation/OptimisationFunction.java
create mode 100644 src/core/de.evoal.core.main/src/main/java/de/evoal/core/api/optimisation/OptimisationFunctionDecorator.java
create mode 100644 src/core/de.evoal.core.main/src/main/java/de/evoal/core/api/optimisation/OptimisationValue.java
create mode 100644 src/core/de.evoal.core.main/src/main/java/de/evoal/core/api/optimisation/OptimisationValueComparator.java
create mode 100644 src/core/de.evoal.core.main/src/main/java/de/evoal/core/api/statistics/Candidate.java
create mode 100644 src/core/de.evoal.core.main/src/main/java/de/evoal/core/api/statistics/IterationResult.java
rename src/core/de.evoal.core.main/src/main/java/de/evoal/core/api/statistics/{ => io}/Writer.java (92%)
rename src/core/de.evoal.core.main/src/main/java/de/evoal/core/api/statistics/{ => io}/WriterException.java (83%)
rename src/core/de.evoal.core.main/src/main/java/de/evoal/core/api/statistics/{ => io}/WriterStrategy.java (86%)
create mode 100644 src/core/de.evoal.core.main/src/main/java/de/evoal/core/api/statistics/writer/AbstractCandidateStatisticsWriter.java
rename src/core/de.evoal.core.main/src/main/java/de/evoal/core/api/statistics/{ => writer}/Column.java (88%)
rename src/core/de.evoal.core.main/src/main/java/de/evoal/core/api/statistics/{ => writer}/ColumnType.java (70%)
rename src/core/de.evoal.core.main/src/main/java/de/evoal/core/api/statistics/{ => writer}/StatisticsWriter.java (57%)
rename src/core/de.evoal.core.main/src/main/java/de/evoal/core/api/statistics/{ => writer}/WriterContext.java (96%)
rename src/core/de.evoal.core.main/src/main/java/de/evoal/core/main/{ea => }/comparator/WeightedSumComparator.java (65%)
rename src/core/de.evoal.core.main/src/main/java/de/evoal/core/main/{ea/comparator/WeightedSumFitnessValue.java => comparator/WeightedSumOptimisationValue.java} (72%)
delete mode 100644 src/core/de.evoal.core.main/src/main/java/de/evoal/core/main/ea/comparator/ParetoComparator.java
delete mode 100644 src/core/de.evoal.core.main/src/main/java/de/evoal/core/main/jenetics/ConstraintList.java
create mode 100644 src/core/de.evoal.core.main/src/main/java/de/evoal/core/main/statistics/fitness/OptimisingStatistics.java
delete mode 100644 src/core/de.evoal.core.main/src/main/java/de/evoal/core/main/statistics/fitness/OptimizingStatistics.java
rename src/core/de.evoal.core.main/src/main/java/de/evoal/core/main/statistics/{writer => io}/csv/CsvStrategy.java (82%)
rename src/core/de.evoal.core.main/src/main/java/de/evoal/core/main/statistics/{writer => io}/csv/CsvWriter.java (89%)
create mode 100644 src/core/de.evoal.core.main/src/main/resources/META-INF/definitions/data/constraints.dl
create mode 100644 src/core/de.evoal.core.main/src/test/java/de/evoal/core/api/utils/LanguageHelperRegressionTest.java
create mode 100644 src/core/de.evoal.core.main/src/test/java/de/evoal/core/api/utils/LanguageHelperUnitTest.java
create mode 100644 src/core/de.evoal.core.main/src/test/resources/de/evoal/core/api/utils/regressions/generator.dl
create mode 100644 src/core/de.evoal.core.main/src/test/resources/de/evoal/core/api/utils/regressions/shekel.generator
create mode 100644 src/core/de.evoal.core.main/src/test/resources/de/evoal/core/api/utils/regressions/test.ddl
rename src/core/de.evoal.generator.main/src/main/resources/META-INF/{specifications => definitions}/generator/main.dl (95%)
diff --git a/src/core/de.evoal.approximative.density/pom.xml b/src/core/de.evoal.approximative.density/pom.xml
index 6a7f9a02..d6d004df 100644
--- a/src/core/de.evoal.approximative.density/pom.xml
+++ b/src/core/de.evoal.approximative.density/pom.xml
@@ -7,6 +7,7 @@
<groupId>de.evoal</groupId>
<artifactId>core.plugin</artifactId>
<version>0.9.0-SNAPSHOT</version>
+ <relativePath>../de.evoal.core.plugin</relativePath>
</parent>
<artifactId>approximative.density</artifactId>
diff --git a/src/core/de.evoal.approximative.density/src/main/java/de/evoal/approximative/density/ea/fitness/DensityBasedFitness.java b/src/core/de.evoal.approximative.density/src/main/java/de/evoal/approximative/density/ea/fitness/DensityBasedFitness.java
index abaed5ee..0d2d8435 100644
--- a/src/core/de.evoal.approximative.density/src/main/java/de/evoal/approximative/density/ea/fitness/DensityBasedFitness.java
+++ b/src/core/de.evoal.approximative.density/src/main/java/de/evoal/approximative/density/ea/fitness/DensityBasedFitness.java
@@ -1,13 +1,13 @@
package de.evoal.approximative.density.ea.fitness;
import de.evoal.approximative.density.model.DensityData;
-import de.evoal.core.api.ea.fitness.FitnessFunction;
+import de.evoal.core.api.optimisation.OptimisationFunction;
import de.evoal.core.api.properties.Properties;
import de.evoal.core.api.properties.PropertiesSpecification;
import de.evoal.core.api.properties.info.PropertiesRanges;
import de.evoal.core.api.utils.LanguageHelper;
import de.evoal.core.api.utils.Requirements;
-import de.evoal.core.api.ea.fitness.FitnessDecorator;
+import de.evoal.core.api.optimisation.OptimisationFunctionDecorator;
import de.evoal.languages.model.instance.Instance;
import de.evoal.surrogate.api.configuration.PartialFunctionConfiguration;
import de.evoal.surrogate.api.function.FunctionCombiner;
@@ -22,7 +22,7 @@ import java.util.function.BiFunction;
@Slf4j
@Vetoed
-public abstract class DensityBasedFitness extends FitnessDecorator {
+public abstract class DensityBasedFitness extends OptimisationFunctionDecorator {
private final BiFunction<PartialFunctionConfiguration, String, DensityData> modelCreator;
@@ -55,7 +55,7 @@ public abstract class DensityBasedFitness extends FitnessDecorator {
}
@Override
- public FitnessFunction init(final Instance config) {
+ public OptimisationFunction init(final Instance config) {
log.info("Setting up density-based fitness calculation.");
super.init(config);
diff --git a/src/core/de.evoal.approximative.density/src/main/java/module-info.java b/src/core/de.evoal.approximative.density/src/main/java/module-info.java
index ceeee4e2..ff9fde44 100644
--- a/src/core/de.evoal.approximative.density/src/main/java/module-info.java
+++ b/src/core/de.evoal.approximative.density/src/main/java/module-info.java
@@ -12,6 +12,7 @@ module de.evoal.approximative.density {
requires de.evoal.surrogate.api;
requires smile.math;
+ requires de.evoal.core.ea;
opens de.evoal.approximative.density.ea.fitness to weld.core.impl;
opens de.evoal.approximative.density.ea.surrogate.gof to weld.core.impl;
diff --git a/src/core/de.evoal.core.arff/pom.xml b/src/core/de.evoal.core.arff/pom.xml
index e54de0a6..b5952996 100644
--- a/src/core/de.evoal.core.arff/pom.xml
+++ b/src/core/de.evoal.core.arff/pom.xml
@@ -7,6 +7,7 @@
<groupId>de.evoal</groupId>
<artifactId>core.plugin</artifactId>
<version>0.9.0-SNAPSHOT</version>
+ <relativePath>../de.evoal.core.plugin</relativePath>
</parent>
<artifactId>core.arff</artifactId>
diff --git a/src/core/de.evoal.core.ea/pom.xml b/src/core/de.evoal.core.ea/pom.xml
new file mode 100644
index 00000000..168bd7c0
--- /dev/null
+++ b/src/core/de.evoal.core.ea/pom.xml
@@ -0,0 +1,78 @@
+<project xmlns="http://maven.apache.org/POM/4.0.0"
+ xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
+ xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd">
+ <modelVersion>4.0.0</modelVersion>
+
+ <parent>
+ <groupId>de.evoal</groupId>
+ <artifactId>core.plugin</artifactId>
+ <version>0.9.0-SNAPSHOT</version>
+ <relativePath>../de.evoal.core.plugin</relativePath>
+ </parent>
+
+ <artifactId>core.ea</artifactId>
+ <name>EvoAl - Core - Evolutionary Algorithm</name>
+
+ <dependencies>
+ <dependency>
+ <groupId>org.decimal4j</groupId>
+ <artifactId>decimal4j</artifactId>
+ <version>1.0.3</version>
+ <scope>compile</scope>
+ </dependency>
+
+ <dependency>
+ <groupId>io.jenetics</groupId>
+ <artifactId>jenetics.ext</artifactId>
+ <version>${jenetics.version}</version>
+ <scope>compile</scope>
+ </dependency>
+
+ <dependency>
+ <groupId>com.github.haifengl</groupId>
+ <artifactId>smile-math</artifactId>
+ <version>${smile.version}</version>
+ <scope>compile</scope>
+ </dependency>
+
+ <dependency>
+ <groupId>org.junit.jupiter</groupId>
+ <artifactId>junit-jupiter</artifactId>
+ </dependency>
+
+ <dependency>
+ <groupId>${project.groupId}</groupId>
+ <artifactId>core.junit</artifactId>
+ <version>${project.version}</version>
+ <scope>test</scope>
+ </dependency>
+ </dependencies>
+
+ <build>
+ <plugins>
+ <plugin>
+ <groupId>org.apache.maven.plugins</groupId>
+ <artifactId>maven-compiler-plugin</artifactId>
+ <version>3.10.1</version>
+ <configuration>
+ <annotationProcessorPaths>
+ <path>
+ <groupId>org.projectlombok</groupId>
+ <artifactId>lombok</artifactId>
+ <version>${lombok.version}</version>
+ </path>
+ </annotationProcessorPaths>
+ <compilerArgs>
+ <arg>--add-exports</arg>
+ <arg>io.jenetics.base/io.jenetics.internal.math=de.evoal.core.ea</arg>
+ <arg>--add-exports</arg>
+ <arg>io.jenetics.base/io.jenetics.internal.util=de.evoal.core.ea</arg>
+ <arg>--add-exports</arg>
+ <arg>io.jenetics.base/io.jenetics.internal.collection=de.evoal.core.ea</arg>
+ </compilerArgs>
+ <forceJavacCompilerUse>true</forceJavacCompilerUse>
+ </configuration>
+ </plugin>
+ </plugins>
+ </build>
+</project>
diff --git a/src/core/de.evoal.core.main/src/main/java/de/evoal/core/api/ea/cdi/Fitness.java b/src/core/de.evoal.core.ea/src/main/java/de/evoal/core/ea/api/cdi/Fitness.java
similarity index 91%
rename from src/core/de.evoal.core.main/src/main/java/de/evoal/core/api/ea/cdi/Fitness.java
rename to src/core/de.evoal.core.ea/src/main/java/de/evoal/core/ea/api/cdi/Fitness.java
index f56446d9..ef0c5e39 100644
--- a/src/core/de.evoal.core.main/src/main/java/de/evoal/core/api/ea/cdi/Fitness.java
+++ b/src/core/de.evoal.core.ea/src/main/java/de/evoal/core/ea/api/cdi/Fitness.java
@@ -1,4 +1,4 @@
-package de.evoal.core.api.ea.cdi;
+package de.evoal.core.ea.api.cdi;
import javax.enterprise.util.Nonbinding;
import javax.inject.Qualifier;
diff --git a/src/core/de.evoal.core.main/src/main/java/de/evoal/core/api/ea/codec/CustomCodec.java b/src/core/de.evoal.core.ea/src/main/java/de/evoal/core/ea/api/codec/CustomCodec.java
similarity index 93%
rename from src/core/de.evoal.core.main/src/main/java/de/evoal/core/api/ea/codec/CustomCodec.java
rename to src/core/de.evoal.core.ea/src/main/java/de/evoal/core/ea/api/codec/CustomCodec.java
index 683b2d94..1e15f7a1 100644
--- a/src/core/de.evoal.core.main/src/main/java/de/evoal/core/api/ea/codec/CustomCodec.java
+++ b/src/core/de.evoal.core.ea/src/main/java/de/evoal/core/ea/api/codec/CustomCodec.java
@@ -1,4 +1,4 @@
-package de.evoal.core.api.ea.codec;
+package de.evoal.core.ea.api.codec;
import de.evoal.core.api.properties.Properties;
import io.jenetics.Gene;
diff --git a/src/core/de.evoal.core.main/src/main/java/de/evoal/core/api/ea/constraints/calculation/CalculationFactory.java b/src/core/de.evoal.core.ea/src/main/java/de/evoal/core/ea/api/constraints/calculation/CalculationFactory.java
similarity index 77%
rename from src/core/de.evoal.core.main/src/main/java/de/evoal/core/api/ea/constraints/calculation/CalculationFactory.java
rename to src/core/de.evoal.core.ea/src/main/java/de/evoal/core/ea/api/constraints/calculation/CalculationFactory.java
index 51ec5676..abd116b8 100644
--- a/src/core/de.evoal.core.main/src/main/java/de/evoal/core/api/ea/constraints/calculation/CalculationFactory.java
+++ b/src/core/de.evoal.core.ea/src/main/java/de/evoal/core/ea/api/constraints/calculation/CalculationFactory.java
@@ -1,6 +1,7 @@
-package de.evoal.core.api.ea.constraints.calculation;
+package de.evoal.core.ea.api.constraints.calculation;
-import de.evoal.core.api.ea.constraints.model.Constraint;
+import de.evoal.core.api.cdi.BeanFactory;
+import de.evoal.core.ea.api.constraints.model.Constraint;
import de.evoal.core.api.board.CoreBlackboardEntries;
import de.evoal.core.api.cdi.ConfigurationValue;
import javax.enterprise.context.ApplicationScoped;
@@ -8,9 +9,9 @@ import javax.enterprise.context.ApplicationScoped;
import de.evoal.core.api.utils.LanguageHelper;
import de.evoal.languages.model.instance.Array;
import de.evoal.languages.model.instance.Instance;
-import org.apache.deltaspike.core.api.provider.BeanProvider;
import javax.inject.Inject;
+import java.util.Arrays;
import java.util.HashMap;
import java.util.Map;
@@ -19,9 +20,8 @@ public class CalculationFactory {
private final Map<String, Instance> calculationConfigurationByCategory = new HashMap<>();
@Inject
- public CalculationFactory(final @ConfigurationValue(entry = CoreBlackboardEntries.OPTIMISATION_CONFIGURATION, access = "algorithm.handlers") Array handlerConfigurations) {
- handlerConfigurations.getValues()
- .stream()
+ public CalculationFactory(final @ConfigurationValue(entry = CoreBlackboardEntries.OPTIMISATION_CONFIGURATION, access = "algorithm.handlers") Instance [] handlerConfigurations) {
+ Arrays.stream(handlerConfigurations)
.map(Instance.class::cast)
.filter(LanguageHelper.filterInstanceByType("constraint-handler"))
.forEach(i -> {
@@ -36,7 +36,7 @@ public class CalculationFactory {
final Instance config = calculationConfigurationByCategory.get(constraint.getGroup());
final String calculationName = LanguageHelper.lookup(config, "name");
- final CalculationStrategy strategy = BeanProvider.getContextualReference(calculationName, false, CalculationStrategy.class);
+ final CalculationStrategy strategy = BeanFactory.create(calculationName, CalculationStrategy.class);
strategy.init(constraint, config);
return strategy;
diff --git a/src/core/de.evoal.core.main/src/main/java/de/evoal/core/api/ea/constraints/calculation/CalculationStrategy.java b/src/core/de.evoal.core.ea/src/main/java/de/evoal/core/ea/api/constraints/calculation/CalculationStrategy.java
similarity index 85%
rename from src/core/de.evoal.core.main/src/main/java/de/evoal/core/api/ea/constraints/calculation/CalculationStrategy.java
rename to src/core/de.evoal.core.ea/src/main/java/de/evoal/core/ea/api/constraints/calculation/CalculationStrategy.java
index 24a389e4..87e1f179 100644
--- a/src/core/de.evoal.core.main/src/main/java/de/evoal/core/api/ea/constraints/calculation/CalculationStrategy.java
+++ b/src/core/de.evoal.core.ea/src/main/java/de/evoal/core/ea/api/constraints/calculation/CalculationStrategy.java
@@ -1,7 +1,7 @@
-package de.evoal.core.api.ea.constraints.calculation;
+package de.evoal.core.ea.api.constraints.calculation;
-import de.evoal.core.api.ea.constraints.strategies.CalculationResult;
-import de.evoal.core.api.ea.constraints.model.Constraint;
+import de.evoal.core.ea.api.constraints.strategies.CalculationResult;
+import de.evoal.core.ea.api.constraints.model.Constraint;
import de.evoal.core.api.properties.Properties;
import de.evoal.languages.model.instance.Instance;
import lombok.NonNull;
diff --git a/src/core/de.evoal.core.main/src/main/java/de/evoal/core/api/ea/constraints/model/Constraint.java b/src/core/de.evoal.core.ea/src/main/java/de/evoal/core/ea/api/constraints/model/Constraint.java
similarity index 96%
rename from src/core/de.evoal.core.main/src/main/java/de/evoal/core/api/ea/constraints/model/Constraint.java
rename to src/core/de.evoal.core.ea/src/main/java/de/evoal/core/ea/api/constraints/model/Constraint.java
index c55abd06..d7e6d38c 100644
--- a/src/core/de.evoal.core.main/src/main/java/de/evoal/core/api/ea/constraints/model/Constraint.java
+++ b/src/core/de.evoal.core.ea/src/main/java/de/evoal/core/ea/api/constraints/model/Constraint.java
@@ -1,4 +1,4 @@
-package de.evoal.core.api.ea.constraints.model;
+package de.evoal.core.ea.api.constraints.model;
import de.evoal.core.api.properties.Properties;
import de.evoal.core.api.properties.PropertySpecification;
diff --git a/src/core/de.evoal.core.main/src/main/java/de/evoal/core/api/ea/constraints/model/ConstraintResult.java b/src/core/de.evoal.core.ea/src/main/java/de/evoal/core/ea/api/constraints/model/ConstraintResult.java
similarity index 93%
rename from src/core/de.evoal.core.main/src/main/java/de/evoal/core/api/ea/constraints/model/ConstraintResult.java
rename to src/core/de.evoal.core.ea/src/main/java/de/evoal/core/ea/api/constraints/model/ConstraintResult.java
index af435030..b5a2cb94 100644
--- a/src/core/de.evoal.core.main/src/main/java/de/evoal/core/api/ea/constraints/model/ConstraintResult.java
+++ b/src/core/de.evoal.core.ea/src/main/java/de/evoal/core/ea/api/constraints/model/ConstraintResult.java
@@ -1,4 +1,4 @@
-package de.evoal.core.api.ea.constraints.model;
+package de.evoal.core.ea.api.constraints.model;
import de.evoal.core.api.properties.PropertySpecification;
import lombok.Data;
diff --git a/src/core/de.evoal.core.main/src/main/java/de/evoal/core/api/ea/constraints/model/ConstraintType.java b/src/core/de.evoal.core.ea/src/main/java/de/evoal/core/ea/api/constraints/model/ConstraintType.java
similarity index 78%
rename from src/core/de.evoal.core.main/src/main/java/de/evoal/core/api/ea/constraints/model/ConstraintType.java
rename to src/core/de.evoal.core.ea/src/main/java/de/evoal/core/ea/api/constraints/model/ConstraintType.java
index 3ed3568a..9f306c3a 100644
--- a/src/core/de.evoal.core.main/src/main/java/de/evoal/core/api/ea/constraints/model/ConstraintType.java
+++ b/src/core/de.evoal.core.ea/src/main/java/de/evoal/core/ea/api/constraints/model/ConstraintType.java
@@ -1,4 +1,4 @@
-package de.evoal.core.api.ea.constraints.model;
+package de.evoal.core.ea.api.constraints.model;
/**
* Type of the constraint. A constraint can either be an equality constraint
diff --git a/src/core/de.evoal.core.main/src/main/java/de/evoal/core/api/ea/constraints/model/Constraints.java b/src/core/de.evoal.core.ea/src/main/java/de/evoal/core/ea/api/constraints/model/Constraints.java
similarity index 94%
rename from src/core/de.evoal.core.main/src/main/java/de/evoal/core/api/ea/constraints/model/Constraints.java
rename to src/core/de.evoal.core.ea/src/main/java/de/evoal/core/ea/api/constraints/model/Constraints.java
index b34928c8..70cb827d 100644
--- a/src/core/de.evoal.core.main/src/main/java/de/evoal/core/api/ea/constraints/model/Constraints.java
+++ b/src/core/de.evoal.core.ea/src/main/java/de/evoal/core/ea/api/constraints/model/Constraints.java
@@ -1,4 +1,4 @@
-package de.evoal.core.api.ea.constraints.model;
+package de.evoal.core.ea.api.constraints.model;
import de.evoal.core.api.properties.Properties;
import javax.enterprise.inject.Vetoed;
diff --git a/src/core/de.evoal.core.main/src/main/java/de/evoal/core/api/ea/constraints/model/DataConstraints.java b/src/core/de.evoal.core.ea/src/main/java/de/evoal/core/ea/api/constraints/model/DataConstraints.java
similarity index 97%
rename from src/core/de.evoal.core.main/src/main/java/de/evoal/core/api/ea/constraints/model/DataConstraints.java
rename to src/core/de.evoal.core.ea/src/main/java/de/evoal/core/ea/api/constraints/model/DataConstraints.java
index 6a57f417..69699261 100644
--- a/src/core/de.evoal.core.main/src/main/java/de/evoal/core/api/ea/constraints/model/DataConstraints.java
+++ b/src/core/de.evoal.core.ea/src/main/java/de/evoal/core/ea/api/constraints/model/DataConstraints.java
@@ -1,4 +1,4 @@
-package de.evoal.core.api.ea.constraints.model;
+package de.evoal.core.ea.api.constraints.model;
import de.evoal.languages.model.ddl.DataDescription;
import de.evoal.languages.model.ddl.DataDescriptionModel;
diff --git a/src/core/de.evoal.core.main/src/main/java/de/evoal/core/api/ea/constraints/model/package-info.java b/src/core/de.evoal.core.ea/src/main/java/de/evoal/core/ea/api/constraints/model/package-info.java
similarity index 62%
rename from src/core/de.evoal.core.main/src/main/java/de/evoal/core/api/ea/constraints/model/package-info.java
rename to src/core/de.evoal.core.ea/src/main/java/de/evoal/core/ea/api/constraints/model/package-info.java
index 31b616e2..e5e3b94f 100644
--- a/src/core/de.evoal.core.main/src/main/java/de/evoal/core/api/ea/constraints/model/package-info.java
+++ b/src/core/de.evoal.core.ea/src/main/java/de/evoal/core/ea/api/constraints/model/package-info.java
@@ -1,4 +1,4 @@
/**
* The constraint model that can be used by implementing extensions.
*/
-package de.evoal.core.api.ea.constraints.model;
\ No newline at end of file
+package de.evoal.core.ea.api.constraints.model;
\ No newline at end of file
diff --git a/src/core/de.evoal.core.main/src/main/java/de/evoal/core/api/ea/constraints/package-info.java b/src/core/de.evoal.core.ea/src/main/java/de/evoal/core/ea/api/constraints/package-info.java
similarity index 72%
rename from src/core/de.evoal.core.main/src/main/java/de/evoal/core/api/ea/constraints/package-info.java
rename to src/core/de.evoal.core.ea/src/main/java/de/evoal/core/ea/api/constraints/package-info.java
index 77b586b4..4fe22a2c 100644
--- a/src/core/de.evoal.core.main/src/main/java/de/evoal/core/api/ea/constraints/package-info.java
+++ b/src/core/de.evoal.core.ea/src/main/java/de/evoal/core/ea/api/constraints/package-info.java
@@ -2,4 +2,4 @@
* This package contains everything that has to do with constraints of
* genotypes or individuals.
*/
-package de.evoal.core.api.ea.constraints;
\ No newline at end of file
+package de.evoal.core.ea.api.constraints;
\ No newline at end of file
diff --git a/src/core/de.evoal.core.main/src/main/java/de/evoal/core/api/ea/constraints/strategies/CalculationResult.java b/src/core/de.evoal.core.ea/src/main/java/de/evoal/core/ea/api/constraints/strategies/CalculationResult.java
similarity index 89%
rename from src/core/de.evoal.core.main/src/main/java/de/evoal/core/api/ea/constraints/strategies/CalculationResult.java
rename to src/core/de.evoal.core.ea/src/main/java/de/evoal/core/ea/api/constraints/strategies/CalculationResult.java
index 2c72effc..89283d25 100644
--- a/src/core/de.evoal.core.main/src/main/java/de/evoal/core/api/ea/constraints/strategies/CalculationResult.java
+++ b/src/core/de.evoal.core.ea/src/main/java/de/evoal/core/ea/api/constraints/strategies/CalculationResult.java
@@ -1,6 +1,6 @@
-package de.evoal.core.api.ea.constraints.strategies;
+package de.evoal.core.ea.api.constraints.strategies;
-import de.evoal.core.api.ea.constraints.model.ConstraintResult;
+import de.evoal.core.ea.api.constraints.model.ConstraintResult;
import lombok.Data;
/**
diff --git a/src/core/de.evoal.core.main/src/main/java/de/evoal/core/api/ea/constraints/strategies/HandlingStrategy.java b/src/core/de.evoal.core.ea/src/main/java/de/evoal/core/ea/api/constraints/strategies/HandlingStrategy.java
similarity index 76%
rename from src/core/de.evoal.core.main/src/main/java/de/evoal/core/api/ea/constraints/strategies/HandlingStrategy.java
rename to src/core/de.evoal.core.ea/src/main/java/de/evoal/core/ea/api/constraints/strategies/HandlingStrategy.java
index 3a0687c1..44ea5b58 100644
--- a/src/core/de.evoal.core.main/src/main/java/de/evoal/core/api/ea/constraints/strategies/HandlingStrategy.java
+++ b/src/core/de.evoal.core.ea/src/main/java/de/evoal/core/ea/api/constraints/strategies/HandlingStrategy.java
@@ -1,4 +1,4 @@
-package de.evoal.core.api.ea.constraints.strategies;
+package de.evoal.core.ea.api.constraints.strategies;
/**
* A constraint handling strategy. The actual implementation decides what to do with
diff --git a/src/core/de.evoal.core.main/src/main/java/de/evoal/core/api/ea/constraints/strategies/RepairStrategy.java b/src/core/de.evoal.core.ea/src/main/java/de/evoal/core/ea/api/constraints/strategies/RepairStrategy.java
similarity index 88%
rename from src/core/de.evoal.core.main/src/main/java/de/evoal/core/api/ea/constraints/strategies/RepairStrategy.java
rename to src/core/de.evoal.core.ea/src/main/java/de/evoal/core/ea/api/constraints/strategies/RepairStrategy.java
index f9b54934..1fe3543c 100644
--- a/src/core/de.evoal.core.main/src/main/java/de/evoal/core/api/ea/constraints/strategies/RepairStrategy.java
+++ b/src/core/de.evoal.core.ea/src/main/java/de/evoal/core/ea/api/constraints/strategies/RepairStrategy.java
@@ -1,4 +1,4 @@
-package de.evoal.core.api.ea.constraints.strategies;
+package de.evoal.core.ea.api.constraints.strategies;
import de.evoal.languages.model.instance.Instance;
import io.jenetics.Gene;
diff --git a/src/core/de.evoal.core.main/src/main/java/de/evoal/core/api/ea/constraints/strategies/fitness/MalusForFitnessStrategy.java b/src/core/de.evoal.core.ea/src/main/java/de/evoal/core/ea/api/constraints/strategies/fitness/MalusForFitnessStrategy.java
similarity index 85%
rename from src/core/de.evoal.core.main/src/main/java/de/evoal/core/api/ea/constraints/strategies/fitness/MalusForFitnessStrategy.java
rename to src/core/de.evoal.core.ea/src/main/java/de/evoal/core/ea/api/constraints/strategies/fitness/MalusForFitnessStrategy.java
index c6d19237..b74ca6b8 100644
--- a/src/core/de.evoal.core.main/src/main/java/de/evoal/core/api/ea/constraints/strategies/fitness/MalusForFitnessStrategy.java
+++ b/src/core/de.evoal.core.ea/src/main/java/de/evoal/core/ea/api/constraints/strategies/fitness/MalusForFitnessStrategy.java
@@ -1,8 +1,8 @@
-package de.evoal.core.api.ea.constraints.strategies.fitness;
+package de.evoal.core.ea.api.constraints.strategies.fitness;
-import de.evoal.core.api.ea.constraints.strategies.HandlingStrategy;
-import de.evoal.core.api.ea.constraints.strategies.fitness.internal.ChainFunction;
-import de.evoal.core.api.ea.constraints.strategies.fitness.internal.IdentityFunction;
+import de.evoal.core.ea.api.constraints.strategies.HandlingStrategy;
+import de.evoal.core.ea.api.constraints.strategies.fitness.internal.ChainFunction;
+import de.evoal.core.ea.api.constraints.strategies.fitness.internal.IdentityFunction;
import de.evoal.core.api.properties.Properties;
/**
diff --git a/src/core/de.evoal.core.main/src/main/java/de/evoal/core/api/ea/constraints/strategies/fitness/MalusFunction.java b/src/core/de.evoal.core.ea/src/main/java/de/evoal/core/ea/api/constraints/strategies/fitness/MalusFunction.java
similarity index 89%
rename from src/core/de.evoal.core.main/src/main/java/de/evoal/core/api/ea/constraints/strategies/fitness/MalusFunction.java
rename to src/core/de.evoal.core.ea/src/main/java/de/evoal/core/ea/api/constraints/strategies/fitness/MalusFunction.java
index f05f19b9..ef7bf096 100644
--- a/src/core/de.evoal.core.main/src/main/java/de/evoal/core/api/ea/constraints/strategies/fitness/MalusFunction.java
+++ b/src/core/de.evoal.core.ea/src/main/java/de/evoal/core/ea/api/constraints/strategies/fitness/MalusFunction.java
@@ -1,4 +1,4 @@
-package de.evoal.core.api.ea.constraints.strategies.fitness;
+package de.evoal.core.ea.api.constraints.strategies.fitness;
import de.evoal.core.api.properties.Properties;
diff --git a/src/core/de.evoal.core.main/src/main/java/de/evoal/core/api/ea/constraints/strategies/fitness/internal/ChainFunction.java b/src/core/de.evoal.core.ea/src/main/java/de/evoal/core/ea/api/constraints/strategies/fitness/internal/ChainFunction.java
similarity index 84%
rename from src/core/de.evoal.core.main/src/main/java/de/evoal/core/api/ea/constraints/strategies/fitness/internal/ChainFunction.java
rename to src/core/de.evoal.core.ea/src/main/java/de/evoal/core/ea/api/constraints/strategies/fitness/internal/ChainFunction.java
index 1e785595..60a50370 100644
--- a/src/core/de.evoal.core.main/src/main/java/de/evoal/core/api/ea/constraints/strategies/fitness/internal/ChainFunction.java
+++ b/src/core/de.evoal.core.ea/src/main/java/de/evoal/core/ea/api/constraints/strategies/fitness/internal/ChainFunction.java
@@ -1,6 +1,6 @@
-package de.evoal.core.api.ea.constraints.strategies.fitness.internal;
+package de.evoal.core.ea.api.constraints.strategies.fitness.internal;
-import de.evoal.core.api.ea.constraints.strategies.fitness.MalusFunction;
+import de.evoal.core.ea.api.constraints.strategies.fitness.MalusFunction;
import de.evoal.core.api.properties.Properties;
public class ChainFunction implements MalusFunction {
diff --git a/src/core/de.evoal.core.main/src/main/java/de/evoal/core/api/ea/constraints/strategies/fitness/internal/IdentityFunction.java b/src/core/de.evoal.core.ea/src/main/java/de/evoal/core/ea/api/constraints/strategies/fitness/internal/IdentityFunction.java
similarity index 69%
rename from src/core/de.evoal.core.main/src/main/java/de/evoal/core/api/ea/constraints/strategies/fitness/internal/IdentityFunction.java
rename to src/core/de.evoal.core.ea/src/main/java/de/evoal/core/ea/api/constraints/strategies/fitness/internal/IdentityFunction.java
index 268b71c7..5f7d3f7e 100644
--- a/src/core/de.evoal.core.main/src/main/java/de/evoal/core/api/ea/constraints/strategies/fitness/internal/IdentityFunction.java
+++ b/src/core/de.evoal.core.ea/src/main/java/de/evoal/core/ea/api/constraints/strategies/fitness/internal/IdentityFunction.java
@@ -1,6 +1,6 @@
-package de.evoal.core.api.ea.constraints.strategies.fitness.internal;
+package de.evoal.core.ea.api.constraints.strategies.fitness.internal;
-import de.evoal.core.api.ea.constraints.strategies.fitness.MalusFunction;
+import de.evoal.core.ea.api.constraints.strategies.fitness.MalusFunction;
import de.evoal.core.api.properties.Properties;
public class IdentityFunction implements MalusFunction {
diff --git a/src/core/de.evoal.core.main/src/main/java/de/evoal/core/api/ea/constraints/strategies/fitness/internal/package-info.java b/src/core/de.evoal.core.ea/src/main/java/de/evoal/core/ea/api/constraints/strategies/fitness/internal/package-info.java
similarity index 54%
rename from src/core/de.evoal.core.main/src/main/java/de/evoal/core/api/ea/constraints/strategies/fitness/internal/package-info.java
rename to src/core/de.evoal.core.ea/src/main/java/de/evoal/core/ea/api/constraints/strategies/fitness/internal/package-info.java
index cc59a125..fc1c069d 100644
--- a/src/core/de.evoal.core.main/src/main/java/de/evoal/core/api/ea/constraints/strategies/fitness/internal/package-info.java
+++ b/src/core/de.evoal.core.ea/src/main/java/de/evoal/core/ea/api/constraints/strategies/fitness/internal/package-info.java
@@ -1,4 +1,4 @@
/**
* Internal classes that are not inteded for usage by clients.
*/
-package de.evoal.core.api.ea.constraints.strategies.fitness.internal;
\ No newline at end of file
+package de.evoal.core.ea.api.constraints.strategies.fitness.internal;
\ No newline at end of file
diff --git a/src/core/de.evoal.core.main/src/main/java/de/evoal/core/api/ea/constraints/strategies/fitness/package-info.java b/src/core/de.evoal.core.ea/src/main/java/de/evoal/core/ea/api/constraints/strategies/fitness/package-info.java
similarity index 81%
rename from src/core/de.evoal.core.main/src/main/java/de/evoal/core/api/ea/constraints/strategies/fitness/package-info.java
rename to src/core/de.evoal.core.ea/src/main/java/de/evoal/core/ea/api/constraints/strategies/fitness/package-info.java
index 9ead63b4..678118e2 100644
--- a/src/core/de.evoal.core.main/src/main/java/de/evoal/core/api/ea/constraints/strategies/fitness/package-info.java
+++ b/src/core/de.evoal.core.ea/src/main/java/de/evoal/core/ea/api/constraints/strategies/fitness/package-info.java
@@ -4,4 +4,4 @@
* this strategy is to reduce the fitness based on the calculated constraint
* difference.
*/
-package de.evoal.core.api.ea.constraints.strategies.fitness;
\ No newline at end of file
+package de.evoal.core.ea.api.constraints.strategies.fitness;
\ No newline at end of file
diff --git a/src/core/de.evoal.core.main/src/main/java/de/evoal/core/api/ea/correlations/Correlation.java b/src/core/de.evoal.core.ea/src/main/java/de/evoal/core/ea/api/correlations/Correlation.java
similarity index 89%
rename from src/core/de.evoal.core.main/src/main/java/de/evoal/core/api/ea/correlations/Correlation.java
rename to src/core/de.evoal.core.ea/src/main/java/de/evoal/core/ea/api/correlations/Correlation.java
index ac64ab6d..501285b7 100644
--- a/src/core/de.evoal.core.main/src/main/java/de/evoal/core/api/ea/correlations/Correlation.java
+++ b/src/core/de.evoal.core.ea/src/main/java/de/evoal/core/ea/api/correlations/Correlation.java
@@ -1,6 +1,6 @@
-package de.evoal.core.api.ea.correlations;
+package de.evoal.core.ea.api.correlations;
-import de.evoal.core.api.ea.codec.CustomCodec;
+import de.evoal.core.ea.api.codec.CustomCodec;
import lombok.Data;
/**
diff --git a/src/core/de.evoal.core.main/src/main/java/de/evoal/core/api/ea/correlations/Correlations.java b/src/core/de.evoal.core.ea/src/main/java/de/evoal/core/ea/api/correlations/Correlations.java
similarity index 95%
rename from src/core/de.evoal.core.main/src/main/java/de/evoal/core/api/ea/correlations/Correlations.java
rename to src/core/de.evoal.core.ea/src/main/java/de/evoal/core/ea/api/correlations/Correlations.java
index 182a46aa..f57489c2 100644
--- a/src/core/de.evoal.core.main/src/main/java/de/evoal/core/api/ea/correlations/Correlations.java
+++ b/src/core/de.evoal.core.ea/src/main/java/de/evoal/core/ea/api/correlations/Correlations.java
@@ -1,6 +1,6 @@
-package de.evoal.core.api.ea.correlations;
+package de.evoal.core.ea.api.correlations;
-import de.evoal.core.api.ea.codec.CustomCodec;
+import de.evoal.core.ea.api.codec.CustomCodec;
import de.evoal.core.api.properties.Properties;
import io.jenetics.Gene;
import io.jenetics.Genotype;
diff --git a/src/core/de.evoal.core.main/src/main/java/de/evoal/core/api/ea/correlations/Range.java b/src/core/de.evoal.core.ea/src/main/java/de/evoal/core/ea/api/correlations/Range.java
similarity index 88%
rename from src/core/de.evoal.core.main/src/main/java/de/evoal/core/api/ea/correlations/Range.java
rename to src/core/de.evoal.core.ea/src/main/java/de/evoal/core/ea/api/correlations/Range.java
index 598e4636..d173fbd2 100644
--- a/src/core/de.evoal.core.main/src/main/java/de/evoal/core/api/ea/correlations/Range.java
+++ b/src/core/de.evoal.core.ea/src/main/java/de/evoal/core/ea/api/correlations/Range.java
@@ -1,4 +1,4 @@
-package de.evoal.core.api.ea.correlations;
+package de.evoal.core.ea.api.correlations;
import lombok.AllArgsConstructor;
import lombok.Data;
diff --git a/src/core/de.evoal.core.main/src/main/java/de/evoal/core/api/ea/correlations/RangedCorrelation.java b/src/core/de.evoal.core.ea/src/main/java/de/evoal/core/ea/api/correlations/RangedCorrelation.java
similarity index 95%
rename from src/core/de.evoal.core.main/src/main/java/de/evoal/core/api/ea/correlations/RangedCorrelation.java
rename to src/core/de.evoal.core.ea/src/main/java/de/evoal/core/ea/api/correlations/RangedCorrelation.java
index 064a7a94..62de1611 100644
--- a/src/core/de.evoal.core.main/src/main/java/de/evoal/core/api/ea/correlations/RangedCorrelation.java
+++ b/src/core/de.evoal.core.ea/src/main/java/de/evoal/core/ea/api/correlations/RangedCorrelation.java
@@ -1,4 +1,4 @@
-package de.evoal.core.api.ea.correlations;
+package de.evoal.core.ea.api.correlations;
import lombok.Data;
diff --git a/src/core/de.evoal.core.main/src/main/java/de/evoal/core/api/ea/initial/InitialPopulation.java b/src/core/de.evoal.core.ea/src/main/java/de/evoal/core/ea/api/initial/InitialPopulation.java
similarity index 83%
rename from src/core/de.evoal.core.main/src/main/java/de/evoal/core/api/ea/initial/InitialPopulation.java
rename to src/core/de.evoal.core.ea/src/main/java/de/evoal/core/ea/api/initial/InitialPopulation.java
index 1d419270..aad1378b 100644
--- a/src/core/de.evoal.core.main/src/main/java/de/evoal/core/api/ea/initial/InitialPopulation.java
+++ b/src/core/de.evoal.core.ea/src/main/java/de/evoal/core/ea/api/initial/InitialPopulation.java
@@ -1,12 +1,10 @@
-package de.evoal.core.api.ea.initial;
+package de.evoal.core.ea.api.initial;
import de.evoal.languages.model.instance.Instance;
import io.jenetics.Gene;
import io.jenetics.engine.Engine;
import io.jenetics.engine.EvolutionStream;
-import java.util.function.Function;
-
public interface InitialPopulation<G extends Gene<?, G>, C extends Comparable<C>> {
InitialPopulation init(final Instance initialization);
diff --git a/src/core/de.evoal.core.main/src/main/java/de/evoal/core/api/ea/package-info.java b/src/core/de.evoal.core.ea/src/main/java/de/evoal/core/ea/api/package-info.java
similarity index 75%
rename from src/core/de.evoal.core.main/src/main/java/de/evoal/core/api/ea/package-info.java
rename to src/core/de.evoal.core.ea/src/main/java/de/evoal/core/ea/api/package-info.java
index a3ac75c0..436da35f 100644
--- a/src/core/de.evoal.core.main/src/main/java/de/evoal/core/api/ea/package-info.java
+++ b/src/core/de.evoal.core.ea/src/main/java/de/evoal/core/ea/api/package-info.java
@@ -1,4 +1,4 @@
/**
* Base package for all classes that are related to the evolutionary algorithm.
*/
-package de.evoal.core.api.ea;
\ No newline at end of file
+package de.evoal.core.ea.api;
\ No newline at end of file
diff --git a/src/core/de.evoal.core.main/src/main/java/de/evoal/core/main/ea/alterer/AltererFactory.java b/src/core/de.evoal.core.ea/src/main/java/de/evoal/core/ea/main/alterer/AltererFactory.java
similarity index 61%
rename from src/core/de.evoal.core.main/src/main/java/de/evoal/core/main/ea/alterer/AltererFactory.java
rename to src/core/de.evoal.core.ea/src/main/java/de/evoal/core/ea/main/alterer/AltererFactory.java
index bc094066..17886765 100644
--- a/src/core/de.evoal.core.main/src/main/java/de/evoal/core/main/ea/alterer/AltererFactory.java
+++ b/src/core/de.evoal.core.ea/src/main/java/de/evoal/core/ea/main/alterer/AltererFactory.java
@@ -1,14 +1,14 @@
-package de.evoal.core.main.ea.alterer;
+package de.evoal.core.ea.main.alterer;
import java.util.function.BiFunction;
-import de.evoal.core.api.ea.fitness.comparator.FitnessValue;
-import de.evoal.core.main.ea.alterer.crossover.*;
-import de.evoal.core.main.ea.alterer.internal.MeanCorrelationAlterer;
-import de.evoal.core.main.ea.alterer.mutator.SingleBitFlipCorrelationMutator;
-import de.evoal.core.main.ea.alterer.mutator.SingleBitFlipMutator;
-import de.evoal.core.main.ea.alterer.mutator.SwapCorrelationMutator;
-import de.evoal.core.api.ea.correlations.Correlations;
+import de.evoal.core.api.optimisation.OptimisationValue;
+import de.evoal.core.ea.main.alterer.internal.MeanCorrelationAlterer;
+import de.evoal.core.ea.main.alterer.mutator.SingleBitFlipMutator;
+import de.evoal.core.ea.main.alterer.crossover.*;
+import de.evoal.core.ea.main.alterer.mutator.SingleBitFlipCorrelationMutator;
+import de.evoal.core.ea.main.alterer.mutator.SwapCorrelationMutator;
+import de.evoal.core.ea.api.correlations.Correlations;
import de.evoal.languages.model.instance.Instance;
import de.evoal.core.api.utils.LanguageHelper;
import io.jenetics.*;
@@ -36,7 +36,7 @@ public class AltererFactory {
* <li>None</li>
* </ul>
*/
- public <G extends Gene<?, G>> Alterer<G, FitnessValue> create(final Instance config) {
+ public <G extends Gene<?, G>> Alterer<G, OptimisationValue> create(final Instance config) {
final String name = LanguageHelper.lookup(config, "name");
log.info("Creating alterer with name '{}'.", name);
@@ -44,7 +44,7 @@ public class AltererFactory {
switch(name) {
//case "CompositeAlterer": return createCompositeAlterer(config);
case "mean-alterer": return createMeanAlterer(config);
- case "correlation-mean-alterer": return (Alterer<G, FitnessValue>) createCorrelationMeanAlterer(config);
+ case "correlation-mean-alterer": return (Alterer<G, OptimisationValue>) createCorrelationMeanAlterer(config);
case "partial-matched-alterer": return createPartiallyMatchedAlterer(config);
case "correlation-partial-matched-alterer": return createCorrelationPartiallyMatchedAlterer(config);
@@ -68,128 +68,128 @@ public class AltererFactory {
throw new IllegalStateException("Selector '" + name + "' is unknown.");
}
- private <G extends Gene<?, G>> Alterer<G, FitnessValue> createUniformCrossover(final Instance config) {
+ private <G extends Gene<?, G>> Alterer<G, OptimisationValue> createUniformCrossover(final Instance config) {
final Double crossoverProbability = LanguageHelper.lookup(config, "crossover-probability");
final Double swapProbability = LanguageHelper.lookup(config,"swap-probability");
return new UniformCrossover<>(crossoverProbability, swapProbability);
}
- private <G extends Gene<?, G>> Alterer<G, FitnessValue> createCorrelationUniformCrossover(final Instance config) {
+ private <G extends Gene<?, G>> Alterer<G, OptimisationValue> createCorrelationUniformCrossover(final Instance config) {
final Double crossoverProbability = LanguageHelper.lookup(config, "crossover-probability");
final Double swapProbability = LanguageHelper.lookup(config,"swap-probability");
return new UniformCorrelationCrossover(crossoverProbability, swapProbability, correlations);
}
- private <G extends Gene<?, G>> Alterer<G, FitnessValue> createBitFlipMutator (final Instance config) {
+ private <G extends Gene<?, G>> Alterer<G, OptimisationValue> createBitFlipMutator (final Instance config) {
final Double probability = LanguageHelper.lookup(config, "probability");
return new SingleBitFlipMutator(probability);
}
- private <G extends Gene<?, G>> Alterer<G, FitnessValue> createCorrelationBitFlipMutator (final Instance config) {
+ private <G extends Gene<?, G>> Alterer<G, OptimisationValue> createCorrelationBitFlipMutator (final Instance config) {
final Double probability = LanguageHelper.lookup(config, "probability");
final Double threshold = LanguageHelper.lookup(config, "threshold");
return new SingleBitFlipCorrelationMutator(probability, threshold, correlations);
}
- private <G extends Gene<?, G>> Alterer<G, FitnessValue> createSwapMutator (final Instance config) {
+ private <G extends Gene<?, G>> Alterer<G, OptimisationValue> createSwapMutator (final Instance config) {
final Double probability = LanguageHelper.lookup(config, "probability");
return new SwapMutator<>(probability);
}
- private <G extends Gene<?, G>> Alterer<G, FitnessValue> createCorrelationSwapMutator (final Instance config) {
+ private <G extends Gene<?, G>> Alterer<G, OptimisationValue> createCorrelationSwapMutator (final Instance config) {
final Double probability = LanguageHelper.lookup(config, "probability");
final Double threshold = LanguageHelper.lookup(config, "threshold");
return new SwapCorrelationMutator<>(probability, threshold, correlations);
}
- private <G extends Gene<?, G>> Alterer<G, FitnessValue> createSinglePointCrossover(final Instance config) {
+ private <G extends Gene<?, G>> Alterer<G, OptimisationValue> createSinglePointCrossover(final Instance config) {
final Double probability = LanguageHelper.lookup(config, "probability");
return new SinglePointCrossover<>(probability);
}
- private <G extends Gene<?, G>> Alterer<G, FitnessValue> createCorrelationSinglePointCrossover(final Instance config) {
+ private <G extends Gene<?, G>> Alterer<G, OptimisationValue> createCorrelationSinglePointCrossover(final Instance config) {
final Double probability = LanguageHelper.lookup(config, "probability");
return new SinglePointCorrelationCrossover(probability, correlations);
}
- private <G extends Gene<?, G>> Alterer<G, FitnessValue> createPartiallyMatchedAlterer(final Instance config) {
+ private <G extends Gene<?, G>> Alterer<G, OptimisationValue> createPartiallyMatchedAlterer(final Instance config) {
final Double probability = LanguageHelper.lookup(config, "probability");
- return (Alterer<G, FitnessValue>) new PartiallyMatchedCrossover(probability);
+ return (Alterer<G, OptimisationValue>) new PartiallyMatchedCrossover(probability);
}
- private <G extends Gene<?, G>> Alterer<G, FitnessValue> createCorrelationPartiallyMatchedAlterer(final Instance config) {
+ private <G extends Gene<?, G>> Alterer<G, OptimisationValue> createCorrelationPartiallyMatchedAlterer(final Instance config) {
final Double probability = LanguageHelper.lookup(config, "probability");
- return (Alterer<G, FitnessValue>) new PartiallyMatchedCorrelationCrossover<G, FitnessValue>(probability, correlations);
+ return (Alterer<G, OptimisationValue>) new PartiallyMatchedCorrelationCrossover<G, OptimisationValue>(probability, correlations);
}
- private <G extends Gene<?, G>> Alterer<G, FitnessValue> createMultiPointCrossover(final Instance config) {
+ private <G extends Gene<?, G>> Alterer<G, OptimisationValue> createMultiPointCrossover(final Instance config) {
final Double probability = LanguageHelper.lookup(config, "probability");
final Integer count = LanguageHelper.lookup(config, "count");
return new MultiPointCrossover<>(probability, count);
}
- private <G extends Gene<?, G>> Alterer<G, FitnessValue> createCorrelationMultiPointCrossover(final Instance config) {
+ private <G extends Gene<?, G>> Alterer<G, OptimisationValue> createCorrelationMultiPointCrossover(final Instance config) {
final Double probability = LanguageHelper.lookup(config, "probability");
final Integer count = LanguageHelper.lookup(config, "count");
return new MultiPointCorrelationCrossover<>(probability, count, correlations);
}
- private <G extends Gene<?, G>> Alterer<G, FitnessValue> createMeanAlterer(final Instance config) {
+ private <G extends Gene<?, G>> Alterer<G, OptimisationValue> createMeanAlterer(final Instance config) {
final Double probability = LanguageHelper.lookup(config, "probability");
- return (Alterer<G, FitnessValue>) new MeanAlterer(probability);
+ return (Alterer<G, OptimisationValue>) new MeanAlterer(probability);
}
- private <G extends NumericGene<?, G> & Mean<G>> Alterer<G, FitnessValue> createCorrelationMeanAlterer(final Instance config) {
+ private <G extends NumericGene<?, G> & Mean<G>> Alterer<G, OptimisationValue> createCorrelationMeanAlterer(final Instance config) {
final Double probability = LanguageHelper.lookup(config, "probability");
- return (Alterer<G, FitnessValue>) new MeanCorrelationAlterer<G, FitnessValue>(probability, correlations);
+ return (Alterer<G, OptimisationValue>) new MeanCorrelationAlterer<G, OptimisationValue>(probability, correlations);
}
- private <G extends Gene<?, G>> Alterer<G, FitnessValue> createLineCrossover(final Instance config) {
+ private <G extends Gene<?, G>> Alterer<G, OptimisationValue> createLineCrossover(final Instance config) {
final Double probability = LanguageHelper.lookup(config, "probability");
final Double position = LanguageHelper.lookup(config, "position");
return new LineCrossover(probability, position);
}
- private <G extends Gene<?, G>> Alterer<G, FitnessValue> createCorrelationLineCrossover(final Instance config) {
+ private <G extends Gene<?, G>> Alterer<G, OptimisationValue> createCorrelationLineCrossover(final Instance config) {
final Double probability = LanguageHelper.lookup(config, "probability");
final Double position = LanguageHelper.lookup(config, "position");
return new LineCorrelationCrossover(probability, position, correlations);
}
- private <G extends Gene<?, G>> Alterer<G, FitnessValue> createIntermediateCrossover(final Instance config) {
+ private <G extends Gene<?, G>> Alterer<G, OptimisationValue> createIntermediateCrossover(final Instance config) {
throw new IllegalStateException("Unsupported alterer.");
}
- private <G extends Gene<?,G>> Alterer<G, FitnessValue> createGaussianMutator(final Instance config) {
+ private <G extends Gene<?,G>> Alterer<G, OptimisationValue> createGaussianMutator(final Instance config) {
final Double probability = LanguageHelper.lookup(config, "probability");
return new GaussianMutator(probability);
}
- private <G extends Gene<?, G>> Alterer<G, FitnessValue> createGaussianCorrelationMutator(final Instance config) {
+ private <G extends Gene<?, G>> Alterer<G, OptimisationValue> createGaussianCorrelationMutator(final Instance config) {
final Double probability = LanguageHelper.lookup(config, "probability");
final Double threshold = LanguageHelper.lookup(config, "threshold");
return factory.apply(probability, threshold);
}
- private <G extends Gene<?, G>> Alterer<G, FitnessValue> createCompositeAlterer(final Instance config) {
+ private <G extends Gene<?, G>> Alterer<G, OptimisationValue> createCompositeAlterer(final Instance config) {
throw new IllegalStateException("Unsupported alterer.");
}
}
diff --git a/src/core/de.evoal.core.main/src/main/java/de/evoal/core/main/ea/alterer/crossover/CorrelationCrossover.java b/src/core/de.evoal.core.ea/src/main/java/de/evoal/core/ea/main/alterer/crossover/CorrelationCrossover.java
similarity index 95%
rename from src/core/de.evoal.core.main/src/main/java/de/evoal/core/main/ea/alterer/crossover/CorrelationCrossover.java
rename to src/core/de.evoal.core.ea/src/main/java/de/evoal/core/ea/main/alterer/crossover/CorrelationCrossover.java
index 6c905c34..85618077 100644
--- a/src/core/de.evoal.core.main/src/main/java/de/evoal/core/main/ea/alterer/crossover/CorrelationCrossover.java
+++ b/src/core/de.evoal.core.ea/src/main/java/de/evoal/core/ea/main/alterer/crossover/CorrelationCrossover.java
@@ -1,7 +1,7 @@
-package de.evoal.core.main.ea.alterer.crossover;
+package de.evoal.core.ea.main.alterer.crossover;
-import de.evoal.core.api.ea.correlations.Correlation;
-import de.evoal.core.api.ea.correlations.Correlations;
+import de.evoal.core.ea.api.correlations.Correlation;
+import de.evoal.core.ea.api.correlations.Correlations;
import io.jenetics.*;
import io.jenetics.util.MSeq;
import io.jenetics.util.RandomRegistry;
diff --git a/src/core/de.evoal.core.main/src/main/java/de/evoal/core/main/ea/alterer/crossover/CorrelationCrossoverMemento.java b/src/core/de.evoal.core.ea/src/main/java/de/evoal/core/ea/main/alterer/crossover/CorrelationCrossoverMemento.java
similarity index 71%
rename from src/core/de.evoal.core.main/src/main/java/de/evoal/core/main/ea/alterer/crossover/CorrelationCrossoverMemento.java
rename to src/core/de.evoal.core.ea/src/main/java/de/evoal/core/ea/main/alterer/crossover/CorrelationCrossoverMemento.java
index 904ae719..d68d8672 100644
--- a/src/core/de.evoal.core.main/src/main/java/de/evoal/core/main/ea/alterer/crossover/CorrelationCrossoverMemento.java
+++ b/src/core/de.evoal.core.ea/src/main/java/de/evoal/core/ea/main/alterer/crossover/CorrelationCrossoverMemento.java
@@ -1,6 +1,6 @@
-package de.evoal.core.main.ea.alterer.crossover;
+package de.evoal.core.ea.main.alterer.crossover;
-import de.evoal.core.api.ea.correlations.Correlation;
+import de.evoal.core.ea.api.correlations.Correlation;
public interface CorrelationCrossoverMemento<T extends CorrelationCrossoverMemento<T>> {
diff --git a/src/core/de.evoal.core.main/src/main/java/de/evoal/core/main/ea/alterer/crossover/LineCorrelationCrossover.java b/src/core/de.evoal.core.ea/src/main/java/de/evoal/core/ea/main/alterer/crossover/LineCorrelationCrossover.java
similarity index 96%
rename from src/core/de.evoal.core.main/src/main/java/de/evoal/core/main/ea/alterer/crossover/LineCorrelationCrossover.java
rename to src/core/de.evoal.core.ea/src/main/java/de/evoal/core/ea/main/alterer/crossover/LineCorrelationCrossover.java
index f5b4e587..7fdaa2dc 100644
--- a/src/core/de.evoal.core.main/src/main/java/de/evoal/core/main/ea/alterer/crossover/LineCorrelationCrossover.java
+++ b/src/core/de.evoal.core.ea/src/main/java/de/evoal/core/ea/main/alterer/crossover/LineCorrelationCrossover.java
@@ -1,7 +1,7 @@
-package de.evoal.core.main.ea.alterer.crossover;
+package de.evoal.core.ea.main.alterer.crossover;
import de.evoal.core.api.utils.Requirements;
-import de.evoal.core.api.ea.correlations.Correlations;
+import de.evoal.core.ea.api.correlations.Correlations;
import io.jenetics.NumericGene;
import io.jenetics.util.MSeq;
diff --git a/src/core/de.evoal.core.main/src/main/java/de/evoal/core/main/ea/alterer/crossover/LineCorrelationCrossoverMemento.java b/src/core/de.evoal.core.ea/src/main/java/de/evoal/core/ea/main/alterer/crossover/LineCorrelationCrossoverMemento.java
similarity index 87%
rename from src/core/de.evoal.core.main/src/main/java/de/evoal/core/main/ea/alterer/crossover/LineCorrelationCrossoverMemento.java
rename to src/core/de.evoal.core.ea/src/main/java/de/evoal/core/ea/main/alterer/crossover/LineCorrelationCrossoverMemento.java
index 53b7466c..19761ac2 100644
--- a/src/core/de.evoal.core.main/src/main/java/de/evoal/core/main/ea/alterer/crossover/LineCorrelationCrossoverMemento.java
+++ b/src/core/de.evoal.core.ea/src/main/java/de/evoal/core/ea/main/alterer/crossover/LineCorrelationCrossoverMemento.java
@@ -1,6 +1,6 @@
-package de.evoal.core.main.ea.alterer.crossover;
+package de.evoal.core.ea.main.alterer.crossover;
-import de.evoal.core.api.ea.correlations.Correlation;
+import de.evoal.core.ea.api.correlations.Correlation;
import io.jenetics.util.RandomRegistry;
import lombok.Data;
diff --git a/src/core/de.evoal.core.main/src/main/java/de/evoal/core/main/ea/alterer/crossover/MultiPointCorrelationCrossover.java b/src/core/de.evoal.core.ea/src/main/java/de/evoal/core/ea/main/alterer/crossover/MultiPointCorrelationCrossover.java
similarity index 97%
rename from src/core/de.evoal.core.main/src/main/java/de/evoal/core/main/ea/alterer/crossover/MultiPointCorrelationCrossover.java
rename to src/core/de.evoal.core.ea/src/main/java/de/evoal/core/ea/main/alterer/crossover/MultiPointCorrelationCrossover.java
index 6c822877..2b0e3f0e 100644
--- a/src/core/de.evoal.core.main/src/main/java/de/evoal/core/main/ea/alterer/crossover/MultiPointCorrelationCrossover.java
+++ b/src/core/de.evoal.core.ea/src/main/java/de/evoal/core/ea/main/alterer/crossover/MultiPointCorrelationCrossover.java
@@ -1,6 +1,6 @@
-package de.evoal.core.main.ea.alterer.crossover;
+package de.evoal.core.ea.main.alterer.crossover;
-import de.evoal.core.api.ea.correlations.Correlations;
+import de.evoal.core.ea.api.correlations.Correlations;
import io.jenetics.Gene;
import io.jenetics.util.MSeq;
diff --git a/src/core/de.evoal.core.main/src/main/java/de/evoal/core/main/ea/alterer/crossover/MultiPointCorrelationCrossoverMemento.java b/src/core/de.evoal.core.ea/src/main/java/de/evoal/core/ea/main/alterer/crossover/MultiPointCorrelationCrossoverMemento.java
similarity index 89%
rename from src/core/de.evoal.core.main/src/main/java/de/evoal/core/main/ea/alterer/crossover/MultiPointCorrelationCrossoverMemento.java
rename to src/core/de.evoal.core.ea/src/main/java/de/evoal/core/ea/main/alterer/crossover/MultiPointCorrelationCrossoverMemento.java
index f7513b13..d7acdba9 100644
--- a/src/core/de.evoal.core.main/src/main/java/de/evoal/core/main/ea/alterer/crossover/MultiPointCorrelationCrossoverMemento.java
+++ b/src/core/de.evoal.core.ea/src/main/java/de/evoal/core/ea/main/alterer/crossover/MultiPointCorrelationCrossoverMemento.java
@@ -1,6 +1,6 @@
-package de.evoal.core.main.ea.alterer.crossover;
+package de.evoal.core.ea.main.alterer.crossover;
-import de.evoal.core.api.ea.correlations.Correlation;
+import de.evoal.core.ea.api.correlations.Correlation;
import io.jenetics.internal.math.Subset;
import io.jenetics.util.RandomRegistry;
diff --git a/src/core/de.evoal.core.main/src/main/java/de/evoal/core/main/ea/alterer/crossover/PartiallyMatchedCorrelationCrossover.java b/src/core/de.evoal.core.ea/src/main/java/de/evoal/core/ea/main/alterer/crossover/PartiallyMatchedCorrelationCrossover.java
similarity index 95%
rename from src/core/de.evoal.core.main/src/main/java/de/evoal/core/main/ea/alterer/crossover/PartiallyMatchedCorrelationCrossover.java
rename to src/core/de.evoal.core.ea/src/main/java/de/evoal/core/ea/main/alterer/crossover/PartiallyMatchedCorrelationCrossover.java
index 6df51c8c..a9bafbc4 100644
--- a/src/core/de.evoal.core.main/src/main/java/de/evoal/core/main/ea/alterer/crossover/PartiallyMatchedCorrelationCrossover.java
+++ b/src/core/de.evoal.core.ea/src/main/java/de/evoal/core/ea/main/alterer/crossover/PartiallyMatchedCorrelationCrossover.java
@@ -1,6 +1,6 @@
-package de.evoal.core.main.ea.alterer.crossover;
+package de.evoal.core.ea.main.alterer.crossover;
-import de.evoal.core.api.ea.correlations.Correlations;
+import de.evoal.core.ea.api.correlations.Correlations;
import io.jenetics.EnumGene;
import io.jenetics.util.MSeq;
diff --git a/src/core/de.evoal.core.main/src/main/java/de/evoal/core/main/ea/alterer/crossover/PartiallyMatchedCorrelationCrossoverMemento.java b/src/core/de.evoal.core.ea/src/main/java/de/evoal/core/ea/main/alterer/crossover/PartiallyMatchedCorrelationCrossoverMemento.java
similarity index 87%
rename from src/core/de.evoal.core.main/src/main/java/de/evoal/core/main/ea/alterer/crossover/PartiallyMatchedCorrelationCrossoverMemento.java
rename to src/core/de.evoal.core.ea/src/main/java/de/evoal/core/ea/main/alterer/crossover/PartiallyMatchedCorrelationCrossoverMemento.java
index 37ebc42c..8fa3f211 100644
--- a/src/core/de.evoal.core.main/src/main/java/de/evoal/core/main/ea/alterer/crossover/PartiallyMatchedCorrelationCrossoverMemento.java
+++ b/src/core/de.evoal.core.ea/src/main/java/de/evoal/core/ea/main/alterer/crossover/PartiallyMatchedCorrelationCrossoverMemento.java
@@ -1,6 +1,6 @@
-package de.evoal.core.main.ea.alterer.crossover;
+package de.evoal.core.ea.main.alterer.crossover;
-import de.evoal.core.api.ea.correlations.Correlation;
+import de.evoal.core.ea.api.correlations.Correlation;
import io.jenetics.internal.math.Subset;
import io.jenetics.util.RandomRegistry;
diff --git a/src/core/de.evoal.core.main/src/main/java/de/evoal/core/main/ea/alterer/crossover/SinglePointCorrelationCrossover.java b/src/core/de.evoal.core.ea/src/main/java/de/evoal/core/ea/main/alterer/crossover/SinglePointCorrelationCrossover.java
similarity index 94%
rename from src/core/de.evoal.core.main/src/main/java/de/evoal/core/main/ea/alterer/crossover/SinglePointCorrelationCrossover.java
rename to src/core/de.evoal.core.ea/src/main/java/de/evoal/core/ea/main/alterer/crossover/SinglePointCorrelationCrossover.java
index df7d99e3..785edcbb 100644
--- a/src/core/de.evoal.core.main/src/main/java/de/evoal/core/main/ea/alterer/crossover/SinglePointCorrelationCrossover.java
+++ b/src/core/de.evoal.core.ea/src/main/java/de/evoal/core/ea/main/alterer/crossover/SinglePointCorrelationCrossover.java
@@ -1,6 +1,6 @@
-package de.evoal.core.main.ea.alterer.crossover;
+package de.evoal.core.ea.main.alterer.crossover;
-import de.evoal.core.api.ea.correlations.Correlations;
+import de.evoal.core.ea.api.correlations.Correlations;
import io.jenetics.Gene;
import io.jenetics.util.MSeq;
diff --git a/src/core/de.evoal.core.main/src/main/java/de/evoal/core/main/ea/alterer/crossover/SinglePointCorrelationCrossoverMemento.java b/src/core/de.evoal.core.ea/src/main/java/de/evoal/core/ea/main/alterer/crossover/SinglePointCorrelationCrossoverMemento.java
similarity index 94%
rename from src/core/de.evoal.core.main/src/main/java/de/evoal/core/main/ea/alterer/crossover/SinglePointCorrelationCrossoverMemento.java
rename to src/core/de.evoal.core.ea/src/main/java/de/evoal/core/ea/main/alterer/crossover/SinglePointCorrelationCrossoverMemento.java
index d814190a..2c7d613d 100644
--- a/src/core/de.evoal.core.main/src/main/java/de/evoal/core/main/ea/alterer/crossover/SinglePointCorrelationCrossoverMemento.java
+++ b/src/core/de.evoal.core.ea/src/main/java/de/evoal/core/ea/main/alterer/crossover/SinglePointCorrelationCrossoverMemento.java
@@ -1,6 +1,6 @@
-package de.evoal.core.main.ea.alterer.crossover;
+package de.evoal.core.ea.main.alterer.crossover;
-import de.evoal.core.api.ea.correlations.Correlation;
+import de.evoal.core.ea.api.correlations.Correlation;
import io.jenetics.util.RandomRegistry;
import lombok.Getter;
import lombok.Setter;
diff --git a/src/core/de.evoal.core.main/src/main/java/de/evoal/core/main/ea/alterer/crossover/UniformCorrelationCrossover.java b/src/core/de.evoal.core.ea/src/main/java/de/evoal/core/ea/main/alterer/crossover/UniformCorrelationCrossover.java
similarity index 95%
rename from src/core/de.evoal.core.main/src/main/java/de/evoal/core/main/ea/alterer/crossover/UniformCorrelationCrossover.java
rename to src/core/de.evoal.core.ea/src/main/java/de/evoal/core/ea/main/alterer/crossover/UniformCorrelationCrossover.java
index f9f8bf64..4a8d095b 100644
--- a/src/core/de.evoal.core.main/src/main/java/de/evoal/core/main/ea/alterer/crossover/UniformCorrelationCrossover.java
+++ b/src/core/de.evoal.core.ea/src/main/java/de/evoal/core/ea/main/alterer/crossover/UniformCorrelationCrossover.java
@@ -1,7 +1,7 @@
-package de.evoal.core.main.ea.alterer.crossover;
+package de.evoal.core.ea.main.alterer.crossover;
import de.evoal.core.api.utils.Requirements;
-import de.evoal.core.api.ea.correlations.Correlations;
+import de.evoal.core.ea.api.correlations.Correlations;
import io.jenetics.Gene;
import io.jenetics.util.MSeq;
diff --git a/src/core/de.evoal.core.main/src/main/java/de/evoal/core/main/ea/alterer/crossover/UniformCorrelationCrossoverMemento.java b/src/core/de.evoal.core.ea/src/main/java/de/evoal/core/ea/main/alterer/crossover/UniformCorrelationCrossoverMemento.java
similarity index 95%
rename from src/core/de.evoal.core.main/src/main/java/de/evoal/core/main/ea/alterer/crossover/UniformCorrelationCrossoverMemento.java
rename to src/core/de.evoal.core.ea/src/main/java/de/evoal/core/ea/main/alterer/crossover/UniformCorrelationCrossoverMemento.java
index c48d34fb..4366384e 100644
--- a/src/core/de.evoal.core.main/src/main/java/de/evoal/core/main/ea/alterer/crossover/UniformCorrelationCrossoverMemento.java
+++ b/src/core/de.evoal.core.ea/src/main/java/de/evoal/core/ea/main/alterer/crossover/UniformCorrelationCrossoverMemento.java
@@ -1,6 +1,6 @@
-package de.evoal.core.main.ea.alterer.crossover;
+package de.evoal.core.ea.main.alterer.crossover;
-import de.evoal.core.api.ea.correlations.Correlation;
+import de.evoal.core.ea.api.correlations.Correlation;
import io.jenetics.util.RandomRegistry;
import lombok.Getter;
import lombok.Setter;
diff --git a/src/core/de.evoal.core.main/src/main/java/de/evoal/core/main/ea/alterer/internal/AbstractCorrelationAlterer.java b/src/core/de.evoal.core.ea/src/main/java/de/evoal/core/ea/main/alterer/internal/AbstractCorrelationAlterer.java
similarity index 92%
rename from src/core/de.evoal.core.main/src/main/java/de/evoal/core/main/ea/alterer/internal/AbstractCorrelationAlterer.java
rename to src/core/de.evoal.core.ea/src/main/java/de/evoal/core/ea/main/alterer/internal/AbstractCorrelationAlterer.java
index ec6b6646..a7f727ea 100644
--- a/src/core/de.evoal.core.main/src/main/java/de/evoal/core/main/ea/alterer/internal/AbstractCorrelationAlterer.java
+++ b/src/core/de.evoal.core.ea/src/main/java/de/evoal/core/ea/main/alterer/internal/AbstractCorrelationAlterer.java
@@ -1,4 +1,4 @@
-package de.evoal.core.main.ea.alterer.internal;
+package de.evoal.core.ea.main.alterer.internal;
import io.jenetics.AbstractAlterer;
import io.jenetics.Gene;
diff --git a/src/core/de.evoal.core.main/src/main/java/de/evoal/core/main/ea/alterer/internal/CorrelationCombineAlterer.java b/src/core/de.evoal.core.ea/src/main/java/de/evoal/core/ea/main/alterer/internal/CorrelationCombineAlterer.java
similarity index 96%
rename from src/core/de.evoal.core.main/src/main/java/de/evoal/core/main/ea/alterer/internal/CorrelationCombineAlterer.java
rename to src/core/de.evoal.core.ea/src/main/java/de/evoal/core/ea/main/alterer/internal/CorrelationCombineAlterer.java
index 04c08da2..16b129eb 100644
--- a/src/core/de.evoal.core.main/src/main/java/de/evoal/core/main/ea/alterer/internal/CorrelationCombineAlterer.java
+++ b/src/core/de.evoal.core.ea/src/main/java/de/evoal/core/ea/main/alterer/internal/CorrelationCombineAlterer.java
@@ -1,7 +1,7 @@
-package de.evoal.core.main.ea.alterer.internal;
+package de.evoal.core.ea.main.alterer.internal;
-import de.evoal.core.api.ea.correlations.Correlation;
-import de.evoal.core.api.ea.correlations.Correlations;
+import de.evoal.core.ea.api.correlations.Correlation;
+import de.evoal.core.ea.api.correlations.Correlations;
import io.jenetics.*;
import io.jenetics.util.BaseSeq;
import io.jenetics.util.MSeq;
diff --git a/src/core/de.evoal.core.main/src/main/java/de/evoal/core/main/ea/alterer/internal/CorrelationRecombinator.java b/src/core/de.evoal.core.ea/src/main/java/de/evoal/core/ea/main/alterer/internal/CorrelationRecombinator.java
similarity index 98%
rename from src/core/de.evoal.core.main/src/main/java/de/evoal/core/main/ea/alterer/internal/CorrelationRecombinator.java
rename to src/core/de.evoal.core.ea/src/main/java/de/evoal/core/ea/main/alterer/internal/CorrelationRecombinator.java
index 0b05bb86..a2b67712 100644
--- a/src/core/de.evoal.core.main/src/main/java/de/evoal/core/main/ea/alterer/internal/CorrelationRecombinator.java
+++ b/src/core/de.evoal.core.ea/src/main/java/de/evoal/core/ea/main/alterer/internal/CorrelationRecombinator.java
@@ -1,4 +1,4 @@
-package de.evoal.core.main.ea.alterer.internal;
+package de.evoal.core.ea.main.alterer.internal;
import io.jenetics.AltererResult;
import io.jenetics.Gene;
diff --git a/src/core/de.evoal.core.main/src/main/java/de/evoal/core/main/ea/alterer/internal/MeanCorrelationAlterer.java b/src/core/de.evoal.core.ea/src/main/java/de/evoal/core/ea/main/alterer/internal/MeanCorrelationAlterer.java
similarity index 89%
rename from src/core/de.evoal.core.main/src/main/java/de/evoal/core/main/ea/alterer/internal/MeanCorrelationAlterer.java
rename to src/core/de.evoal.core.ea/src/main/java/de/evoal/core/ea/main/alterer/internal/MeanCorrelationAlterer.java
index 9bf8f08c..07be1b6b 100644
--- a/src/core/de.evoal.core.main/src/main/java/de/evoal/core/main/ea/alterer/internal/MeanCorrelationAlterer.java
+++ b/src/core/de.evoal.core.ea/src/main/java/de/evoal/core/ea/main/alterer/internal/MeanCorrelationAlterer.java
@@ -1,6 +1,6 @@
-package de.evoal.core.main.ea.alterer.internal;
+package de.evoal.core.ea.main.alterer.internal;
-import de.evoal.core.api.ea.correlations.Correlations;
+import de.evoal.core.ea.api.correlations.Correlations;
import io.jenetics.*;
import io.jenetics.util.Mean;
diff --git a/src/core/de.evoal.core.main/src/main/java/de/evoal/core/main/ea/alterer/mutator/CorrelationMutator.java b/src/core/de.evoal.core.ea/src/main/java/de/evoal/core/ea/main/alterer/mutator/CorrelationMutator.java
similarity index 97%
rename from src/core/de.evoal.core.main/src/main/java/de/evoal/core/main/ea/alterer/mutator/CorrelationMutator.java
rename to src/core/de.evoal.core.ea/src/main/java/de/evoal/core/ea/main/alterer/mutator/CorrelationMutator.java
index 9419b4f1..78033e4e 100644
--- a/src/core/de.evoal.core.main/src/main/java/de/evoal/core/main/ea/alterer/mutator/CorrelationMutator.java
+++ b/src/core/de.evoal.core.ea/src/main/java/de/evoal/core/ea/main/alterer/mutator/CorrelationMutator.java
@@ -1,8 +1,8 @@
-package de.evoal.core.main.ea.alterer.mutator;
+package de.evoal.core.ea.main.alterer.mutator;
-import de.evoal.core.main.ea.alterer.internal.AbstractCorrelationAlterer;
-import de.evoal.core.api.ea.correlations.Correlation;
-import de.evoal.core.api.ea.correlations.Correlations;
+import de.evoal.core.ea.main.alterer.internal.AbstractCorrelationAlterer;
+import de.evoal.core.ea.api.correlations.Correlation;
+import de.evoal.core.ea.api.correlations.Correlations;
import io.jenetics.*;
import io.jenetics.internal.math.Probabilities;
import io.jenetics.util.ISeq;
diff --git a/src/core/de.evoal.core.main/src/main/java/de/evoal/core/main/ea/alterer/mutator/CorrelationMutatorFactory.java b/src/core/de.evoal.core.ea/src/main/java/de/evoal/core/ea/main/alterer/mutator/CorrelationMutatorFactory.java
similarity index 87%
rename from src/core/de.evoal.core.main/src/main/java/de/evoal/core/main/ea/alterer/mutator/CorrelationMutatorFactory.java
rename to src/core/de.evoal.core.ea/src/main/java/de/evoal/core/ea/main/alterer/mutator/CorrelationMutatorFactory.java
index a7beee87..84cb1a68 100644
--- a/src/core/de.evoal.core.main/src/main/java/de/evoal/core/main/ea/alterer/mutator/CorrelationMutatorFactory.java
+++ b/src/core/de.evoal.core.ea/src/main/java/de/evoal/core/ea/main/alterer/mutator/CorrelationMutatorFactory.java
@@ -1,7 +1,7 @@
-package de.evoal.core.main.ea.alterer.mutator;
+package de.evoal.core.ea.main.alterer.mutator;
import de.evoal.core.api.board.Blackboard;
-import de.evoal.core.api.ea.correlations.Correlations;
+import de.evoal.core.ea.api.correlations.Correlations;
import io.jenetics.Alterer;
import javax.enterprise.context.ApplicationScoped;
import javax.enterprise.inject.Produces;
diff --git a/src/core/de.evoal.core.main/src/main/java/de/evoal/core/main/ea/alterer/mutator/CorrelationMutatorMemento.java b/src/core/de.evoal.core.ea/src/main/java/de/evoal/core/ea/main/alterer/mutator/CorrelationMutatorMemento.java
similarity index 70%
rename from src/core/de.evoal.core.main/src/main/java/de/evoal/core/main/ea/alterer/mutator/CorrelationMutatorMemento.java
rename to src/core/de.evoal.core.ea/src/main/java/de/evoal/core/ea/main/alterer/mutator/CorrelationMutatorMemento.java
index c16a79c2..b076919d 100644
--- a/src/core/de.evoal.core.main/src/main/java/de/evoal/core/main/ea/alterer/mutator/CorrelationMutatorMemento.java
+++ b/src/core/de.evoal.core.ea/src/main/java/de/evoal/core/ea/main/alterer/mutator/CorrelationMutatorMemento.java
@@ -1,7 +1,7 @@
-package de.evoal.core.main.ea.alterer.mutator;
+package de.evoal.core.ea.main.alterer.mutator;
-import de.evoal.core.api.ea.correlations.Correlation;
+import de.evoal.core.ea.api.correlations.Correlation;
/**
* Memento to preserve the state of correlation-aware mutator.
diff --git a/src/core/de.evoal.core.main/src/main/java/de/evoal/core/main/ea/alterer/mutator/GaussianCorrelationMutator.java b/src/core/de.evoal.core.ea/src/main/java/de/evoal/core/ea/main/alterer/mutator/GaussianCorrelationMutator.java
similarity index 90%
rename from src/core/de.evoal.core.main/src/main/java/de/evoal/core/main/ea/alterer/mutator/GaussianCorrelationMutator.java
rename to src/core/de.evoal.core.ea/src/main/java/de/evoal/core/ea/main/alterer/mutator/GaussianCorrelationMutator.java
index 8fc7d7b5..c4bf3d67 100644
--- a/src/core/de.evoal.core.main/src/main/java/de/evoal/core/main/ea/alterer/mutator/GaussianCorrelationMutator.java
+++ b/src/core/de.evoal.core.ea/src/main/java/de/evoal/core/ea/main/alterer/mutator/GaussianCorrelationMutator.java
@@ -1,6 +1,6 @@
-package de.evoal.core.main.ea.alterer.mutator;
+package de.evoal.core.ea.main.alterer.mutator;
-import de.evoal.core.api.ea.correlations.Correlations;
+import de.evoal.core.ea.api.correlations.Correlations;
import io.jenetics.NumericGene;
import java.util.random.RandomGenerator;
@@ -47,7 +47,7 @@ public class GaussianCorrelationMutator<
@Override
public String toString() {
- return format("%s[p=%f]", getClass().getSimpleName(), _probability);
+ return String.format("%s[p=%f]", getClass().getSimpleName(), _probability);
}
@Override
diff --git a/src/core/de.evoal.core.main/src/main/java/de/evoal/core/main/ea/alterer/mutator/GaussianCorrelationMutatorMemento.java b/src/core/de.evoal.core.ea/src/main/java/de/evoal/core/ea/main/alterer/mutator/GaussianCorrelationMutatorMemento.java
similarity index 91%
rename from src/core/de.evoal.core.main/src/main/java/de/evoal/core/main/ea/alterer/mutator/GaussianCorrelationMutatorMemento.java
rename to src/core/de.evoal.core.ea/src/main/java/de/evoal/core/ea/main/alterer/mutator/GaussianCorrelationMutatorMemento.java
index d492e41e..826cd7e0 100644
--- a/src/core/de.evoal.core.main/src/main/java/de/evoal/core/main/ea/alterer/mutator/GaussianCorrelationMutatorMemento.java
+++ b/src/core/de.evoal.core.ea/src/main/java/de/evoal/core/ea/main/alterer/mutator/GaussianCorrelationMutatorMemento.java
@@ -1,6 +1,6 @@
-package de.evoal.core.main.ea.alterer.mutator;
+package de.evoal.core.ea.main.alterer.mutator;
-import de.evoal.core.api.ea.correlations.Correlation;
+import de.evoal.core.ea.api.correlations.Correlation;
import lombok.Data;
import java.util.Random;
diff --git a/src/core/de.evoal.core.main/src/main/java/de/evoal/core/main/ea/alterer/mutator/SingleBitFlipCorrelationMutator.java b/src/core/de.evoal.core.ea/src/main/java/de/evoal/core/ea/main/alterer/mutator/SingleBitFlipCorrelationMutator.java
similarity index 97%
rename from src/core/de.evoal.core.main/src/main/java/de/evoal/core/main/ea/alterer/mutator/SingleBitFlipCorrelationMutator.java
rename to src/core/de.evoal.core.ea/src/main/java/de/evoal/core/ea/main/alterer/mutator/SingleBitFlipCorrelationMutator.java
index b3ce2a63..2b71541a 100644
--- a/src/core/de.evoal.core.main/src/main/java/de/evoal/core/main/ea/alterer/mutator/SingleBitFlipCorrelationMutator.java
+++ b/src/core/de.evoal.core.ea/src/main/java/de/evoal/core/ea/main/alterer/mutator/SingleBitFlipCorrelationMutator.java
@@ -1,6 +1,6 @@
-package de.evoal.core.main.ea.alterer.mutator;
+package de.evoal.core.ea.main.alterer.mutator;
-import de.evoal.core.api.ea.correlations.Correlations;
+import de.evoal.core.ea.api.correlations.Correlations;
import io.jenetics.*;
import io.jenetics.util.MSeq;
diff --git a/src/core/de.evoal.core.main/src/main/java/de/evoal/core/main/ea/alterer/mutator/SingleBitFlipCorrelationMutatorMemento.java b/src/core/de.evoal.core.ea/src/main/java/de/evoal/core/ea/main/alterer/mutator/SingleBitFlipCorrelationMutatorMemento.java
similarity index 96%
rename from src/core/de.evoal.core.main/src/main/java/de/evoal/core/main/ea/alterer/mutator/SingleBitFlipCorrelationMutatorMemento.java
rename to src/core/de.evoal.core.ea/src/main/java/de/evoal/core/ea/main/alterer/mutator/SingleBitFlipCorrelationMutatorMemento.java
index 28f26afa..ec047b65 100644
--- a/src/core/de.evoal.core.main/src/main/java/de/evoal/core/main/ea/alterer/mutator/SingleBitFlipCorrelationMutatorMemento.java
+++ b/src/core/de.evoal.core.ea/src/main/java/de/evoal/core/ea/main/alterer/mutator/SingleBitFlipCorrelationMutatorMemento.java
@@ -1,6 +1,6 @@
-package de.evoal.core.main.ea.alterer.mutator;
+package de.evoal.core.ea.main.alterer.mutator;
-import de.evoal.core.api.ea.correlations.Correlation;
+import de.evoal.core.ea.api.correlations.Correlation;
import lombok.Getter;
import lombok.Setter;
diff --git a/src/core/de.evoal.core.main/src/main/java/de/evoal/core/main/ea/alterer/mutator/SingleBitFlipMutator.java b/src/core/de.evoal.core.ea/src/main/java/de/evoal/core/ea/main/alterer/mutator/SingleBitFlipMutator.java
similarity index 96%
rename from src/core/de.evoal.core.main/src/main/java/de/evoal/core/main/ea/alterer/mutator/SingleBitFlipMutator.java
rename to src/core/de.evoal.core.ea/src/main/java/de/evoal/core/ea/main/alterer/mutator/SingleBitFlipMutator.java
index 2aab3ccf..44bfaa47 100644
--- a/src/core/de.evoal.core.main/src/main/java/de/evoal/core/main/ea/alterer/mutator/SingleBitFlipMutator.java
+++ b/src/core/de.evoal.core.ea/src/main/java/de/evoal/core/ea/main/alterer/mutator/SingleBitFlipMutator.java
@@ -1,4 +1,4 @@
-package de.evoal.core.main.ea.alterer.mutator;
+package de.evoal.core.ea.main.alterer.mutator;
import io.jenetics.*;
import io.jenetics.util.MSeq;
diff --git a/src/core/de.evoal.core.main/src/main/java/de/evoal/core/main/ea/alterer/mutator/SwapCorrelationMutator.java b/src/core/de.evoal.core.ea/src/main/java/de/evoal/core/ea/main/alterer/mutator/SwapCorrelationMutator.java
similarity index 94%
rename from src/core/de.evoal.core.main/src/main/java/de/evoal/core/main/ea/alterer/mutator/SwapCorrelationMutator.java
rename to src/core/de.evoal.core.ea/src/main/java/de/evoal/core/ea/main/alterer/mutator/SwapCorrelationMutator.java
index 272ba8e8..ee4b3684 100644
--- a/src/core/de.evoal.core.main/src/main/java/de/evoal/core/main/ea/alterer/mutator/SwapCorrelationMutator.java
+++ b/src/core/de.evoal.core.ea/src/main/java/de/evoal/core/ea/main/alterer/mutator/SwapCorrelationMutator.java
@@ -1,6 +1,6 @@
-package de.evoal.core.main.ea.alterer.mutator;
+package de.evoal.core.ea.main.alterer.mutator;
-import de.evoal.core.api.ea.correlations.Correlations;
+import de.evoal.core.ea.api.correlations.Correlations;
import io.jenetics.Chromosome;
import io.jenetics.Gene;
import io.jenetics.MutatorResult;
diff --git a/src/core/de.evoal.core.main/src/main/java/de/evoal/core/main/ea/alterer/mutator/SwapCorrelationMutatorMemento.java b/src/core/de.evoal.core.ea/src/main/java/de/evoal/core/ea/main/alterer/mutator/SwapCorrelationMutatorMemento.java
similarity index 87%
rename from src/core/de.evoal.core.main/src/main/java/de/evoal/core/main/ea/alterer/mutator/SwapCorrelationMutatorMemento.java
rename to src/core/de.evoal.core.ea/src/main/java/de/evoal/core/ea/main/alterer/mutator/SwapCorrelationMutatorMemento.java
index c38bf41c..e0fa7d96 100644
--- a/src/core/de.evoal.core.main/src/main/java/de/evoal/core/main/ea/alterer/mutator/SwapCorrelationMutatorMemento.java
+++ b/src/core/de.evoal.core.ea/src/main/java/de/evoal/core/ea/main/alterer/mutator/SwapCorrelationMutatorMemento.java
@@ -1,6 +1,6 @@
-package de.evoal.core.main.ea.alterer.mutator;
+package de.evoal.core.ea.main.alterer.mutator;
-import de.evoal.core.api.ea.correlations.Correlation;
+import de.evoal.core.ea.api.correlations.Correlation;
import java.util.random.RandomGenerator;
diff --git a/src/core/de.evoal.core.main/src/main/java/de/evoal/core/main/ea/codec/DynamicCodec.java b/src/core/de.evoal.core.ea/src/main/java/de/evoal/core/ea/main/codec/DynamicCodec.java
similarity index 82%
rename from src/core/de.evoal.core.main/src/main/java/de/evoal/core/main/ea/codec/DynamicCodec.java
rename to src/core/de.evoal.core.ea/src/main/java/de/evoal/core/ea/main/codec/DynamicCodec.java
index c9e32d19..714bce24 100644
--- a/src/core/de.evoal.core.main/src/main/java/de/evoal/core/main/ea/codec/DynamicCodec.java
+++ b/src/core/de.evoal.core.ea/src/main/java/de/evoal/core/ea/main/codec/DynamicCodec.java
@@ -1,23 +1,20 @@
-package de.evoal.core.main.ea.codec;
+package de.evoal.core.ea.main.codec;
import de.evoal.core.api.cdi.BeanFactory;
-import de.evoal.core.api.ea.codec.CustomCodec;
+import de.evoal.core.ea.api.codec.CustomCodec;
import de.evoal.core.api.properties.Properties;
import de.evoal.core.api.properties.PropertiesSpecification;
-import de.evoal.core.main.ea.codec.chromosome.DynamicChromosome;
-import de.evoal.core.main.ea.codec.chromosome.DynamicChromosomeFactory;
-import de.evoal.languages.model.ddl.DataDescription;
+import de.evoal.core.ea.main.codec.chromosome.DynamicChromosome;
+import de.evoal.core.ea.main.codec.chromosome.DynamicChromosomeFactory;
import de.evoal.languages.model.instance.Array;
-import de.evoal.languages.model.instance.Attribute;
-import de.evoal.languages.model.instance.DataReference;
import de.evoal.languages.model.instance.Instance;
import io.jenetics.Chromosome;
import io.jenetics.Gene;
import io.jenetics.Genotype;
import io.jenetics.util.Factory;
import lombok.extern.slf4j.Slf4j;
-import org.apache.commons.math3.util.Pair;
+import java.util.Arrays;
import java.util.List;
import java.util.function.Function;
import java.util.stream.Collectors;
@@ -34,10 +31,9 @@ public class DynamicCodec<G extends Gene<?, G>> implements CustomCodec<G> {
this.dynamicTemplates = dynamicTemplates;
}
- static DynamicCodec from(final Array config, final PropertiesSpecification specification) {
+ static DynamicCodec from(final Instance [] config, final PropertiesSpecification specification) {
final DynamicChromosomeFactory factory = BeanFactory.create(DynamicChromosomeFactory.class);
- final List<DynamicChromosome> chromosomes = config.getValues()
- .stream()
+ final List<DynamicChromosome> chromosomes = Arrays.stream(config)
.map(Instance.class::cast)
.map(factory::create)
.collect(Collectors.toList());
diff --git a/src/core/de.evoal.core.main/src/main/java/de/evoal/core/main/ea/codec/DynamicCodecProducer.java b/src/core/de.evoal.core.ea/src/main/java/de/evoal/core/ea/main/codec/DynamicCodecProducer.java
similarity index 78%
rename from src/core/de.evoal.core.main/src/main/java/de/evoal/core/main/ea/codec/DynamicCodecProducer.java
rename to src/core/de.evoal.core.ea/src/main/java/de/evoal/core/ea/main/codec/DynamicCodecProducer.java
index bd7eec67..e8abb952 100644
--- a/src/core/de.evoal.core.main/src/main/java/de/evoal/core/main/ea/codec/DynamicCodecProducer.java
+++ b/src/core/de.evoal.core.ea/src/main/java/de/evoal/core/ea/main/codec/DynamicCodecProducer.java
@@ -1,9 +1,10 @@
-package de.evoal.core.main.ea.codec;
+package de.evoal.core.ea.main.codec;
import de.evoal.core.api.board.CoreBlackboardEntries;
import de.evoal.core.api.cdi.ConfigurationValue;
import de.evoal.core.api.properties.PropertiesSpecification;
import de.evoal.languages.model.instance.Array;
+import de.evoal.languages.model.instance.Instance;
import lombok.extern.slf4j.Slf4j;
import javax.enterprise.context.ApplicationScoped;
@@ -14,7 +15,7 @@ import javax.inject.Named;
@Slf4j
public class DynamicCodecProducer {
@Produces @ApplicationScoped
- public DynamicCodec create(@ConfigurationValue(entry = CoreBlackboardEntries.OPTIMISATION_CONFIGURATION, access = "algorithm.genotype") Array config, final @Named("genotype-specification") PropertiesSpecification specification) {
+ public DynamicCodec create(@ConfigurationValue(entry = CoreBlackboardEntries.OPTIMISATION_CONFIGURATION, access = "algorithm.genotype") Instance[] config, final @Named("genotype-specification") PropertiesSpecification specification) {
log.info("Creating encoding for EA problem.");
return DynamicCodec.from(config, specification);
diff --git a/src/core/de.evoal.core.main/src/main/java/de/evoal/core/main/ea/codec/chromosome/DynamicBitChromosome.java b/src/core/de.evoal.core.ea/src/main/java/de/evoal/core/ea/main/codec/chromosome/DynamicBitChromosome.java
similarity index 75%
rename from src/core/de.evoal.core.main/src/main/java/de/evoal/core/main/ea/codec/chromosome/DynamicBitChromosome.java
rename to src/core/de.evoal.core.ea/src/main/java/de/evoal/core/ea/main/codec/chromosome/DynamicBitChromosome.java
index c050bb51..ef50d766 100644
--- a/src/core/de.evoal.core.main/src/main/java/de/evoal/core/main/ea/codec/chromosome/DynamicBitChromosome.java
+++ b/src/core/de.evoal.core.ea/src/main/java/de/evoal/core/ea/main/codec/chromosome/DynamicBitChromosome.java
@@ -1,14 +1,9 @@
-package de.evoal.core.main.ea.codec.chromosome;
+package de.evoal.core.ea.main.codec.chromosome;
import de.evoal.core.api.properties.Properties;
import de.evoal.core.api.properties.PropertySpecification;
-import de.evoal.core.api.utils.Requirements;
-import de.evoal.core.main.jenetics.BitHelper;
-import de.evoal.core.main.jenetics.GrayBoundedBitChromosome;
-import de.evoal.core.main.jenetics.NaiveBoundedBitChromosome;
-import de.evoal.languages.model.el.IntegerLiteral;
-import de.evoal.languages.model.instance.Instance;
-import de.evoal.languages.model.instance.LiteralValue;
+import de.evoal.core.ea.main.jenetics.BitHelper;
+import de.evoal.core.ea.main.jenetics.NaiveBoundedBitChromosome;
import io.jenetics.Chromosome;
import io.jenetics.util.DoubleRange;
diff --git a/src/core/de.evoal.core.main/src/main/java/de/evoal/core/main/ea/codec/chromosome/DynamicBoundedDoubleChromosome.java b/src/core/de.evoal.core.ea/src/main/java/de/evoal/core/ea/main/codec/chromosome/DynamicBoundedDoubleChromosome.java
similarity index 95%
rename from src/core/de.evoal.core.main/src/main/java/de/evoal/core/main/ea/codec/chromosome/DynamicBoundedDoubleChromosome.java
rename to src/core/de.evoal.core.ea/src/main/java/de/evoal/core/ea/main/codec/chromosome/DynamicBoundedDoubleChromosome.java
index 2b85fc68..6775e82c 100644
--- a/src/core/de.evoal.core.main/src/main/java/de/evoal/core/main/ea/codec/chromosome/DynamicBoundedDoubleChromosome.java
+++ b/src/core/de.evoal.core.ea/src/main/java/de/evoal/core/ea/main/codec/chromosome/DynamicBoundedDoubleChromosome.java
@@ -1,4 +1,4 @@
-package de.evoal.core.main.ea.codec.chromosome;
+package de.evoal.core.ea.main.codec.chromosome;
import de.evoal.core.api.properties.PropertySpecification;
import de.evoal.core.api.properties.info.PropertiesBoundaries;
diff --git a/src/core/de.evoal.core.main/src/main/java/de/evoal/core/main/ea/codec/chromosome/DynamicBoundedIntegerChromosome.java b/src/core/de.evoal.core.ea/src/main/java/de/evoal/core/ea/main/codec/chromosome/DynamicBoundedIntegerChromosome.java
similarity index 92%
rename from src/core/de.evoal.core.main/src/main/java/de/evoal/core/main/ea/codec/chromosome/DynamicBoundedIntegerChromosome.java
rename to src/core/de.evoal.core.ea/src/main/java/de/evoal/core/ea/main/codec/chromosome/DynamicBoundedIntegerChromosome.java
index 70d8330c..18a9b497 100644
--- a/src/core/de.evoal.core.main/src/main/java/de/evoal/core/main/ea/codec/chromosome/DynamicBoundedIntegerChromosome.java
+++ b/src/core/de.evoal.core.ea/src/main/java/de/evoal/core/ea/main/codec/chromosome/DynamicBoundedIntegerChromosome.java
@@ -1,10 +1,9 @@
-package de.evoal.core.main.ea.codec.chromosome;
+package de.evoal.core.ea.main.codec.chromosome;
import de.evoal.core.api.properties.PropertySpecification;
import de.evoal.core.api.properties.info.PropertiesBoundaries;
import de.evoal.languages.model.ddl.DataDescription;
import de.evoal.languages.model.instance.Instance;
-import io.jenetics.util.DoubleRange;
import io.jenetics.util.IntRange;
import javax.inject.Inject;
diff --git a/src/core/de.evoal.core.main/src/main/java/de/evoal/core/main/ea/codec/chromosome/DynamicChromosome.java b/src/core/de.evoal.core.ea/src/main/java/de/evoal/core/ea/main/codec/chromosome/DynamicChromosome.java
similarity index 97%
rename from src/core/de.evoal.core.main/src/main/java/de/evoal/core/main/ea/codec/chromosome/DynamicChromosome.java
rename to src/core/de.evoal.core.ea/src/main/java/de/evoal/core/ea/main/codec/chromosome/DynamicChromosome.java
index 99527980..aae68706 100644
--- a/src/core/de.evoal.core.main/src/main/java/de/evoal/core/main/ea/codec/chromosome/DynamicChromosome.java
+++ b/src/core/de.evoal.core.ea/src/main/java/de/evoal/core/ea/main/codec/chromosome/DynamicChromosome.java
@@ -1,4 +1,4 @@
-package de.evoal.core.main.ea.codec.chromosome;
+package de.evoal.core.ea.main.codec.chromosome;
import de.evoal.core.api.properties.Properties;
import de.evoal.core.api.properties.PropertiesSpecification;
diff --git a/src/core/de.evoal.core.main/src/main/java/de/evoal/core/main/ea/codec/chromosome/DynamicChromosomeFactory.java b/src/core/de.evoal.core.ea/src/main/java/de/evoal/core/ea/main/codec/chromosome/DynamicChromosomeFactory.java
similarity index 91%
rename from src/core/de.evoal.core.main/src/main/java/de/evoal/core/main/ea/codec/chromosome/DynamicChromosomeFactory.java
rename to src/core/de.evoal.core.ea/src/main/java/de/evoal/core/ea/main/codec/chromosome/DynamicChromosomeFactory.java
index 72004b58..8a38301c 100644
--- a/src/core/de.evoal.core.main/src/main/java/de/evoal/core/main/ea/codec/chromosome/DynamicChromosomeFactory.java
+++ b/src/core/de.evoal.core.ea/src/main/java/de/evoal/core/ea/main/codec/chromosome/DynamicChromosomeFactory.java
@@ -1,4 +1,4 @@
-package de.evoal.core.main.ea.codec.chromosome;
+package de.evoal.core.ea.main.codec.chromosome;
import de.evoal.core.api.cdi.BeanFactory;
import de.evoal.languages.model.instance.Instance;
diff --git a/src/core/de.evoal.core.main/src/main/java/de/evoal/core/main/ea/codec/chromosome/DynamicDoubleChromosome.java b/src/core/de.evoal.core.ea/src/main/java/de/evoal/core/ea/main/codec/chromosome/DynamicDoubleChromosome.java
similarity index 91%
rename from src/core/de.evoal.core.main/src/main/java/de/evoal/core/main/ea/codec/chromosome/DynamicDoubleChromosome.java
rename to src/core/de.evoal.core.ea/src/main/java/de/evoal/core/ea/main/codec/chromosome/DynamicDoubleChromosome.java
index 15ebc323..ccac308e 100644
--- a/src/core/de.evoal.core.main/src/main/java/de/evoal/core/main/ea/codec/chromosome/DynamicDoubleChromosome.java
+++ b/src/core/de.evoal.core.ea/src/main/java/de/evoal/core/ea/main/codec/chromosome/DynamicDoubleChromosome.java
@@ -1,9 +1,9 @@
-package de.evoal.core.main.ea.codec.chromosome;
+package de.evoal.core.ea.main.codec.chromosome;
import de.evoal.core.api.properties.Properties;
import de.evoal.core.api.properties.PropertySpecification;
-import de.evoal.core.main.jenetics.BoundedDoubleChromosome;
-import de.evoal.core.main.jenetics.BoundedDoubleGene;
+import de.evoal.core.ea.main.jenetics.BoundedDoubleChromosome;
+import de.evoal.core.ea.main.jenetics.BoundedDoubleGene;
import io.jenetics.Chromosome;
import io.jenetics.util.DoubleRange;
diff --git a/src/core/de.evoal.core.main/src/main/java/de/evoal/core/main/ea/codec/chromosome/DynamicGrayChromosome.java b/src/core/de.evoal.core.ea/src/main/java/de/evoal/core/ea/main/codec/chromosome/DynamicGrayChromosome.java
similarity index 75%
rename from src/core/de.evoal.core.main/src/main/java/de/evoal/core/main/ea/codec/chromosome/DynamicGrayChromosome.java
rename to src/core/de.evoal.core.ea/src/main/java/de/evoal/core/ea/main/codec/chromosome/DynamicGrayChromosome.java
index 1c18683b..95c0161c 100644
--- a/src/core/de.evoal.core.main/src/main/java/de/evoal/core/main/ea/codec/chromosome/DynamicGrayChromosome.java
+++ b/src/core/de.evoal.core.ea/src/main/java/de/evoal/core/ea/main/codec/chromosome/DynamicGrayChromosome.java
@@ -1,20 +1,14 @@
-package de.evoal.core.main.ea.codec.chromosome;
+package de.evoal.core.ea.main.codec.chromosome;
import de.evoal.core.api.properties.Properties;
import de.evoal.core.api.properties.PropertySpecification;
-import de.evoal.core.api.utils.Requirements;
-import de.evoal.core.main.jenetics.GrayBoundedBitChromosome;
-import de.evoal.core.main.jenetics.GrayHelper;
-import de.evoal.languages.model.el.IntegerLiteral;
-import de.evoal.languages.model.instance.Instance;
-import de.evoal.languages.model.instance.LiteralValue;
+import de.evoal.core.ea.main.jenetics.GrayBoundedBitChromosome;
+import de.evoal.core.ea.main.jenetics.GrayHelper;
import io.jenetics.Chromosome;
import io.jenetics.util.DoubleRange;
import javax.enterprise.context.Dependent;
import javax.inject.Named;
-import java.util.List;
-import java.util.stream.Collectors;
@Dependent
@Named("gray-chromosome")
diff --git a/src/core/de.evoal.core.main/src/main/java/de/evoal/core/main/ea/codec/chromosome/DynamicIntegerChromosome.java b/src/core/de.evoal.core.ea/src/main/java/de/evoal/core/ea/main/codec/chromosome/DynamicIntegerChromosome.java
similarity index 82%
rename from src/core/de.evoal.core.main/src/main/java/de/evoal/core/main/ea/codec/chromosome/DynamicIntegerChromosome.java
rename to src/core/de.evoal.core.ea/src/main/java/de/evoal/core/ea/main/codec/chromosome/DynamicIntegerChromosome.java
index 44481abd..7b7d2e27 100644
--- a/src/core/de.evoal.core.main/src/main/java/de/evoal/core/main/ea/codec/chromosome/DynamicIntegerChromosome.java
+++ b/src/core/de.evoal.core.ea/src/main/java/de/evoal/core/ea/main/codec/chromosome/DynamicIntegerChromosome.java
@@ -1,17 +1,13 @@
-package de.evoal.core.main.ea.codec.chromosome;
+package de.evoal.core.ea.main.codec.chromosome;
import de.evoal.core.api.properties.Properties;
import de.evoal.core.api.properties.PropertySpecification;
-import de.evoal.core.api.properties.info.PropertiesBoundaries;
-import de.evoal.core.main.jenetics.BoundedDoubleChromosome;
-import de.evoal.core.main.jenetics.BoundedDoubleGene;
-import de.evoal.core.main.jenetics.BoundedIntegerChromosome;
-import de.evoal.core.main.jenetics.BoundedIntegerGene;
+import de.evoal.core.ea.main.jenetics.BoundedIntegerChromosome;
+import de.evoal.core.ea.main.jenetics.BoundedIntegerGene;
import io.jenetics.Chromosome;
import io.jenetics.util.IntRange;
import javax.enterprise.context.Dependent;
-import javax.inject.Inject;
import javax.inject.Named;
import java.util.ArrayList;
import java.util.List;
diff --git a/src/core/de.evoal.core.main/src/main/java/de/evoal/core/main/ea/codec/chromosome/DynamicScaledChromosome.java b/src/core/de.evoal.core.ea/src/main/java/de/evoal/core/ea/main/codec/chromosome/DynamicScaledChromosome.java
similarity index 95%
rename from src/core/de.evoal.core.main/src/main/java/de/evoal/core/main/ea/codec/chromosome/DynamicScaledChromosome.java
rename to src/core/de.evoal.core.ea/src/main/java/de/evoal/core/ea/main/codec/chromosome/DynamicScaledChromosome.java
index 9fd9a45c..950267d2 100644
--- a/src/core/de.evoal.core.main/src/main/java/de/evoal/core/main/ea/codec/chromosome/DynamicScaledChromosome.java
+++ b/src/core/de.evoal.core.ea/src/main/java/de/evoal/core/ea/main/codec/chromosome/DynamicScaledChromosome.java
@@ -1,4 +1,4 @@
-package de.evoal.core.main.ea.codec.chromosome;
+package de.evoal.core.ea.main.codec.chromosome;
import de.evoal.core.api.utils.Requirements;
import de.evoal.languages.model.ddl.DataDescription;
diff --git a/src/core/de.evoal.core.ea/src/main/java/de/evoal/core/ea/main/comparator/ParetoComparator.java b/src/core/de.evoal.core.ea/src/main/java/de/evoal/core/ea/main/comparator/ParetoComparator.java
new file mode 100644
index 00000000..5c955ff5
--- /dev/null
+++ b/src/core/de.evoal.core.ea/src/main/java/de/evoal/core/ea/main/comparator/ParetoComparator.java
@@ -0,0 +1,23 @@
+package de.evoal.core.ea.main.comparator;
+
+import de.evoal.core.api.optimisation.OptimisationValueComparator;
+import de.evoal.core.api.optimisation.OptimisationValue;
+import de.evoal.languages.model.instance.Instance;
+
+import javax.enterprise.context.ApplicationScoped;
+
+import javax.inject.Named;
+
+@ApplicationScoped
+@Named("pareto")
+public class ParetoComparator implements OptimisationValueComparator {
+ @Override
+ public OptimisationValue toValue(final double[] optimisationValues) {
+ return ParetoOptimisationValue.of(optimisationValues);
+ }
+
+ @Override
+ public ParetoComparator init(Instance config) {
+ return this;
+ }
+}
diff --git a/src/core/de.evoal.core.main/src/main/java/de/evoal/core/main/ea/comparator/ParetoFitnessValue.java b/src/core/de.evoal.core.ea/src/main/java/de/evoal/core/ea/main/comparator/ParetoOptimisationValue.java
similarity index 64%
rename from src/core/de.evoal.core.main/src/main/java/de/evoal/core/main/ea/comparator/ParetoFitnessValue.java
rename to src/core/de.evoal.core.ea/src/main/java/de/evoal/core/ea/main/comparator/ParetoOptimisationValue.java
index 4a975682..9ca49b3c 100644
--- a/src/core/de.evoal.core.main/src/main/java/de/evoal/core/main/ea/comparator/ParetoFitnessValue.java
+++ b/src/core/de.evoal.core.ea/src/main/java/de/evoal/core/ea/main/comparator/ParetoOptimisationValue.java
@@ -1,29 +1,29 @@
-package de.evoal.core.main.ea.comparator;
+package de.evoal.core.ea.main.comparator;
import java.util.Arrays;
-import de.evoal.core.api.ea.fitness.comparator.FitnessValue;
+import de.evoal.core.api.optimisation.OptimisationValue;
import io.jenetics.ext.moea.Vec;
import lombok.NonNull;
-public class ParetoFitnessValue implements FitnessValue {
+public class ParetoOptimisationValue implements OptimisationValue {
private final Vec<double []> fitnessValues;
- private ParetoFitnessValue(final @NonNull double[] fitnessValues) {
+ private ParetoOptimisationValue(final @NonNull double[] fitnessValues) {
this.fitnessValues = Vec.of(fitnessValues);
}
- public static FitnessValue of(final double [] fitnessValues) {
- return new ParetoFitnessValue(fitnessValues);
+ public static OptimisationValue of(final double [] fitnessValues) {
+ return new ParetoOptimisationValue(fitnessValues);
}
@Override
- public int compareTo(final FitnessValue other) {
- if(!(other instanceof ParetoFitnessValue)) {
+ public int compareTo(final OptimisationValue other) {
+ if(!(other instanceof ParetoOptimisationValue)) {
throw new IllegalArgumentException("Only allowed to compare pareto fitness values");
}
- return this.makeAbsolute().compareTo(((ParetoFitnessValue)other).makeAbsolute());
+ return this.makeAbsolute().compareTo(((ParetoOptimisationValue)other).makeAbsolute());
}
private final Vec<double[]> makeAbsolute(){
diff --git a/src/core/de.evoal.core.main/src/main/java/de/evoal/core/main/ea/constraints/constraint/ConstraintProducer.java b/src/core/de.evoal.core.ea/src/main/java/de/evoal/core/ea/main/constraints/constraint/ConstraintProducer.java
similarity index 87%
rename from src/core/de.evoal.core.main/src/main/java/de/evoal/core/main/ea/constraints/constraint/ConstraintProducer.java
rename to src/core/de.evoal.core.ea/src/main/java/de/evoal/core/ea/main/constraints/constraint/ConstraintProducer.java
index 2db5c6e8..a681fa71 100644
--- a/src/core/de.evoal.core.main/src/main/java/de/evoal/core/main/ea/constraints/constraint/ConstraintProducer.java
+++ b/src/core/de.evoal.core.ea/src/main/java/de/evoal/core/ea/main/constraints/constraint/ConstraintProducer.java
@@ -1,28 +1,26 @@
-package de.evoal.core.main.ea.constraints.constraint;
+package de.evoal.core.ea.main.constraints.constraint;
import de.evoal.core.api.board.CoreBlackboardEntries;
import de.evoal.core.api.cdi.ConfigurationValue;
-import de.evoal.core.api.ea.constraints.model.Constraint;
-import de.evoal.core.api.ea.constraints.model.Constraints;
-import de.evoal.core.api.ea.constraints.model.DataConstraints;
+import de.evoal.core.ea.api.constraints.model.Constraint;
+import de.evoal.core.ea.api.constraints.model.Constraints;
+import de.evoal.core.ea.api.constraints.model.DataConstraints;
import de.evoal.core.api.properties.PropertiesSpecification;
import javax.enterprise.context.ApplicationScoped;
import javax.enterprise.inject.Produces;
import javax.inject.Named;
-import de.evoal.core.main.ea.constraints.el.ElHelper;
-import de.evoal.core.main.ea.constraints.el.LogHelper;
+import de.evoal.core.ea.main.constraints.constraint.ast.ConditionConverter;
+import de.evoal.core.ea.main.constraints.el.ElHelper;
+import de.evoal.core.ea.main.constraints.el.LogHelper;
import de.evoal.languages.model.ddl.DataDescription;
import de.evoal.languages.model.ddl.FunctionName;
-import de.evoal.languages.model.ddl.dsl.DataDescriptionLanguageStandaloneSetup;
import de.evoal.languages.model.el.Call;
-import de.evoal.core.main.ea.constraints.constraint.ast.ConditionConverter;
import de.evoal.languages.model.instance.Array;
import de.evoal.languages.model.instance.Attribute;
import de.evoal.languages.model.instance.DataReference;
import de.evoal.languages.model.instance.Instance;
import lombok.extern.slf4j.Slf4j;
-import org.eclipse.xtext.serializer.impl.Serializer;
import java.util.Objects;
import java.util.Optional;
diff --git a/src/core/de.evoal.core.main/src/main/java/de/evoal/core/main/ea/constraints/constraint/ast/BoundaryIdentifier.java b/src/core/de.evoal.core.ea/src/main/java/de/evoal/core/ea/main/constraints/constraint/ast/BoundaryIdentifier.java
similarity index 91%
rename from src/core/de.evoal.core.main/src/main/java/de/evoal/core/main/ea/constraints/constraint/ast/BoundaryIdentifier.java
rename to src/core/de.evoal.core.ea/src/main/java/de/evoal/core/ea/main/constraints/constraint/ast/BoundaryIdentifier.java
index d452d228..3aa7e14a 100644
--- a/src/core/de.evoal.core.main/src/main/java/de/evoal/core/main/ea/constraints/constraint/ast/BoundaryIdentifier.java
+++ b/src/core/de.evoal.core.ea/src/main/java/de/evoal/core/ea/main/constraints/constraint/ast/BoundaryIdentifier.java
@@ -1,15 +1,11 @@
-package de.evoal.core.main.ea.constraints.constraint.ast;
+package de.evoal.core.ea.main.constraints.constraint.ast;
-import de.evoal.core.api.ea.constraints.model.DataConstraints;
+import de.evoal.core.ea.api.constraints.model.DataConstraints;
import de.evoal.core.api.properties.PropertySpecification;
import de.evoal.core.api.properties.info.PropertiesBoundaries;
-import de.evoal.core.api.utils.Requirements;
import de.evoal.languages.model.ddl.DataDescription;
-import de.evoal.languages.model.ddl.DataReference;
import de.evoal.languages.model.ddl.RepresentationType;
-import de.evoal.languages.model.ddl.SelfReference;
import de.evoal.languages.model.el.*;
-import de.evoal.languages.model.el.util.ELSwitch;
import lombok.extern.slf4j.Slf4j;
import java.util.*;
diff --git a/src/core/de.evoal.core.main/src/main/java/de/evoal/core/main/ea/constraints/constraint/ast/ConditionConverter.java b/src/core/de.evoal.core.ea/src/main/java/de/evoal/core/ea/main/constraints/constraint/ast/ConditionConverter.java
similarity index 88%
rename from src/core/de.evoal.core.main/src/main/java/de/evoal/core/main/ea/constraints/constraint/ast/ConditionConverter.java
rename to src/core/de.evoal.core.ea/src/main/java/de/evoal/core/ea/main/constraints/constraint/ast/ConditionConverter.java
index d424bb6f..9c0a3952 100644
--- a/src/core/de.evoal.core.main/src/main/java/de/evoal/core/main/ea/constraints/constraint/ast/ConditionConverter.java
+++ b/src/core/de.evoal.core.ea/src/main/java/de/evoal/core/ea/main/constraints/constraint/ast/ConditionConverter.java
@@ -1,12 +1,12 @@
-package de.evoal.core.main.ea.constraints.constraint.ast;
+package de.evoal.core.ea.main.constraints.constraint.ast;
import de.evoal.core.api.utils.Requirements;
-import de.evoal.core.api.ea.constraints.model.ConstraintType;
+import de.evoal.core.ea.api.constraints.model.ConstraintType;
import de.evoal.core.api.properties.Properties;
import de.evoal.core.api.properties.PropertiesSpecification;
import de.evoal.core.api.properties.PropertySpecification;
-import static de.evoal.core.main.ea.constraints.constraint.utils.ArithmeticNumberOperations.*;
+import de.evoal.core.ea.main.constraints.constraint.utils.ArithmeticNumberOperations;
import de.evoal.languages.model.ddl.DataDescription;
import de.evoal.languages.model.ddl.DataReference;
import de.evoal.languages.model.ddl.SelfReference;
@@ -79,13 +79,13 @@ public class ConditionConverter extends ELSwitch<Object> {
case EQUAL:
case GREATER_EQUAL:
case GREATER_THAN: {
- function = (gen, fit) -> minus(leftValue.apply(gen, fit), rightValue.apply(gen, fit));
+ function = (gen, fit) -> ArithmeticNumberOperations.minus(leftValue.apply(gen, fit), rightValue.apply(gen, fit));
break;
}
case LESS_EQUAL:
case LESS_THAN:
{
- function = (gen, fit) -> minus(rightValue.apply(gen, fit), leftValue.apply(gen, fit));
+ function = (gen, fit) -> ArithmeticNumberOperations.minus(rightValue.apply(gen, fit), leftValue.apply(gen, fit));
break;
}
case UNEQUAL: {
@@ -125,13 +125,13 @@ public class ConditionConverter extends ELSwitch<Object> {
switch (operator) {
case ADD: {
final BiFunction<Properties, Properties, Object> lOp = value;
- value = (gen, fit) -> add(lOp.apply(gen, fit), rOp.apply(gen, fit));
+ value = (gen, fit) -> ArithmeticNumberOperations.add(lOp.apply(gen, fit), rOp.apply(gen, fit));
break;
}
case SUBTRACT: {
final BiFunction<Properties, Properties, Object> lOp = value;
- value = (gen, fit) -> minus(lOp.apply(gen, fit), rOp.apply(gen, fit));
+ value = (gen, fit) -> ArithmeticNumberOperations.minus(lOp.apply(gen, fit), rOp.apply(gen, fit));
break;
}
}
@@ -150,19 +150,19 @@ public class ConditionConverter extends ELSwitch<Object> {
switch (operator) {
case DIVIDE: {
final BiFunction<Properties, Properties, Object> lOp = value;
- value = (gen, fit) -> divide(lOp.apply(gen, fit), rOp.apply(gen, fit));
+ value = (gen, fit) -> ArithmeticNumberOperations.divide(lOp.apply(gen, fit), rOp.apply(gen, fit));
break;
}
case MODULO: {
final BiFunction<Properties, Properties, Object> lOp = value;
- value = (gen, fit) -> modulo(lOp.apply(gen, fit), rOp.apply(gen, fit));
+ value = (gen, fit) -> ArithmeticNumberOperations.modulo(lOp.apply(gen, fit), rOp.apply(gen, fit));
break;
}
case MULTIPLY: {
final BiFunction<Properties, Properties, Object> lOp = value;
- value = (gen, fit) -> multiply(lOp.apply(gen, fit), rOp.apply(gen, fit));
+ value = (gen, fit) -> ArithmeticNumberOperations.multiply(lOp.apply(gen, fit), rOp.apply(gen, fit));
break;
}
}
@@ -178,7 +178,7 @@ public class ConditionConverter extends ELSwitch<Object> {
final BiFunction<Properties, Properties, Object> lOp = value;
final BiFunction<Properties, Properties, Object> rOp = (BiFunction<Properties, Properties, Object>) doSwitch(object.getRightOperand());
- value = (gen, fit) -> pow(lOp.apply(gen, fit), rOp.apply(gen, fit));
+ value = (gen, fit) -> ArithmeticNumberOperations.pow(lOp.apply(gen, fit), rOp.apply(gen, fit));
}
return value;
}
@@ -196,7 +196,7 @@ public class ConditionConverter extends ELSwitch<Object> {
case SUBTRACT: {
final BiFunction<Properties, Properties, Object> lOp = value;
- value = (gen, fit) -> minus(0, lOp.apply(gen, fit));
+ value = (gen, fit) -> ArithmeticNumberOperations.minus(0, lOp.apply(gen, fit));
break;
}
}
diff --git a/src/core/de.evoal.core.main/src/main/java/de/evoal/core/main/ea/constraints/constraint/ast/UnaryBoundaryIdentifier.java b/src/core/de.evoal.core.ea/src/main/java/de/evoal/core/ea/main/constraints/constraint/ast/UnaryBoundaryIdentifier.java
similarity index 93%
rename from src/core/de.evoal.core.main/src/main/java/de/evoal/core/main/ea/constraints/constraint/ast/UnaryBoundaryIdentifier.java
rename to src/core/de.evoal.core.ea/src/main/java/de/evoal/core/ea/main/constraints/constraint/ast/UnaryBoundaryIdentifier.java
index c73b01ce..f837106a 100644
--- a/src/core/de.evoal.core.main/src/main/java/de/evoal/core/main/ea/constraints/constraint/ast/UnaryBoundaryIdentifier.java
+++ b/src/core/de.evoal.core.ea/src/main/java/de/evoal/core/ea/main/constraints/constraint/ast/UnaryBoundaryIdentifier.java
@@ -1,21 +1,13 @@
-package de.evoal.core.main.ea.constraints.constraint.ast;
+package de.evoal.core.ea.main.constraints.constraint.ast;
-import de.evoal.core.api.ea.constraints.model.DataConstraints;
-import de.evoal.core.api.properties.PropertySpecification;
-import de.evoal.core.api.properties.info.PropertiesBoundaries;
import de.evoal.core.api.utils.Requirements;
import de.evoal.languages.model.ddl.DataDescription;
import de.evoal.languages.model.ddl.DataReference;
-import de.evoal.languages.model.ddl.RepresentationType;
import de.evoal.languages.model.ddl.SelfReference;
import de.evoal.languages.model.el.*;
import de.evoal.languages.model.el.util.ELSwitch;
import lombok.extern.slf4j.Slf4j;
-import java.util.Arrays;
-import java.util.HashMap;
-import java.util.Map;
-
@Slf4j
public class UnaryBoundaryIdentifier extends ELSwitch<Object> {
diff --git a/src/core/de.evoal.core.main/src/main/java/de/evoal/core/main/ea/constraints/constraint/strategies/calculations/NormalCalculation.java b/src/core/de.evoal.core.ea/src/main/java/de/evoal/core/ea/main/constraints/constraint/strategies/calculations/NormalCalculation.java
similarity index 75%
rename from src/core/de.evoal.core.main/src/main/java/de/evoal/core/main/ea/constraints/constraint/strategies/calculations/NormalCalculation.java
rename to src/core/de.evoal.core.ea/src/main/java/de/evoal/core/ea/main/constraints/constraint/strategies/calculations/NormalCalculation.java
index a12ba46f..6b1cae34 100644
--- a/src/core/de.evoal.core.main/src/main/java/de/evoal/core/main/ea/constraints/constraint/strategies/calculations/NormalCalculation.java
+++ b/src/core/de.evoal.core.ea/src/main/java/de/evoal/core/ea/main/constraints/constraint/strategies/calculations/NormalCalculation.java
@@ -1,8 +1,8 @@
-package de.evoal.core.main.ea.constraints.constraint.strategies.calculations;
+package de.evoal.core.ea.main.constraints.constraint.strategies.calculations;
-import de.evoal.core.api.ea.constraints.model.Constraint;
-import de.evoal.core.api.ea.constraints.strategies.CalculationResult;
-import de.evoal.core.api.ea.constraints.calculation.CalculationStrategy;
+import de.evoal.core.ea.api.constraints.model.Constraint;
+import de.evoal.core.ea.api.constraints.strategies.CalculationResult;
+import de.evoal.core.ea.api.constraints.calculation.CalculationStrategy;
import de.evoal.core.api.properties.Properties;
import javax.enterprise.context.Dependent;
diff --git a/src/core/de.evoal.core.main/src/main/java/de/evoal/core/main/ea/constraints/constraint/strategies/calculations/StandardDeviationCalculation.java b/src/core/de.evoal.core.ea/src/main/java/de/evoal/core/ea/main/constraints/constraint/strategies/calculations/StandardDeviationCalculation.java
similarity index 90%
rename from src/core/de.evoal.core.main/src/main/java/de/evoal/core/main/ea/constraints/constraint/strategies/calculations/StandardDeviationCalculation.java
rename to src/core/de.evoal.core.ea/src/main/java/de/evoal/core/ea/main/constraints/constraint/strategies/calculations/StandardDeviationCalculation.java
index 0c8dd19c..94e64144 100644
--- a/src/core/de.evoal.core.main/src/main/java/de/evoal/core/main/ea/constraints/constraint/strategies/calculations/StandardDeviationCalculation.java
+++ b/src/core/de.evoal.core.ea/src/main/java/de/evoal/core/ea/main/constraints/constraint/strategies/calculations/StandardDeviationCalculation.java
@@ -1,17 +1,17 @@
-package de.evoal.core.main.ea.constraints.constraint.strategies.calculations;
+package de.evoal.core.ea.main.constraints.constraint.strategies.calculations;
-import de.evoal.core.api.ea.constraints.model.Constraint;
-import de.evoal.core.api.ea.constraints.model.ConstraintResult;
-import de.evoal.core.api.ea.constraints.strategies.CalculationResult;
+import de.evoal.core.ea.api.constraints.model.Constraint;
+import de.evoal.core.ea.api.constraints.model.ConstraintResult;
+import de.evoal.core.ea.api.constraints.strategies.CalculationResult;
import de.evoal.core.api.utils.LanguageHelper;
-import de.evoal.core.api.ea.constraints.calculation.CalculationStrategy;
+import de.evoal.core.ea.api.constraints.calculation.CalculationStrategy;
import de.evoal.core.api.properties.Properties;
import de.evoal.core.api.properties.PropertiesSpecification;
import de.evoal.core.api.properties.PropertySpecification;
import javax.enterprise.context.Dependent;
-import de.evoal.core.main.ea.constraints.constraint.utils.ArithmeticNumberOperations;
-import de.evoal.core.main.ea.constraints.deviation.model.Deviations;
+import de.evoal.core.ea.main.constraints.constraint.utils.ArithmeticNumberOperations;
+import de.evoal.core.ea.main.constraints.deviation.model.Deviations;
import de.evoal.languages.model.instance.Instance;
import lombok.NonNull;
import org.apache.commons.math3.util.Pair;
diff --git a/src/core/de.evoal.core.main/src/main/java/de/evoal/core/main/ea/constraints/constraint/strategies/constraint/JeneticsConstraintProducer.java b/src/core/de.evoal.core.ea/src/main/java/de/evoal/core/ea/main/constraints/constraint/strategies/constraint/JeneticsConstraintProducer.java
similarity index 71%
rename from src/core/de.evoal.core.main/src/main/java/de/evoal/core/main/ea/constraints/constraint/strategies/constraint/JeneticsConstraintProducer.java
rename to src/core/de.evoal.core.ea/src/main/java/de/evoal/core/ea/main/constraints/constraint/strategies/constraint/JeneticsConstraintProducer.java
index 6c5ce286..f247107d 100644
--- a/src/core/de.evoal.core.main/src/main/java/de/evoal/core/main/ea/constraints/constraint/strategies/constraint/JeneticsConstraintProducer.java
+++ b/src/core/de.evoal.core.ea/src/main/java/de/evoal/core/ea/main/constraints/constraint/strategies/constraint/JeneticsConstraintProducer.java
@@ -1,18 +1,18 @@
-package de.evoal.core.main.ea.constraints.constraint.strategies.constraint;
+package de.evoal.core.ea.main.constraints.constraint.strategies.constraint;
import de.evoal.core.api.cdi.BeanFactory;
-import de.evoal.core.api.ea.constraints.calculation.CalculationStrategy;
-import de.evoal.core.api.ea.constraints.model.Constraint;
-import de.evoal.core.api.ea.constraints.model.Constraints;
-import de.evoal.core.api.ea.constraints.calculation.CalculationFactory;
+import de.evoal.core.api.optimisation.OptimisationFunction;
+import de.evoal.core.ea.api.constraints.calculation.CalculationStrategy;
+import de.evoal.core.ea.api.constraints.model.Constraint;
+import de.evoal.core.ea.api.constraints.model.Constraints;
+import de.evoal.core.ea.api.constraints.calculation.CalculationFactory;
import de.evoal.core.api.board.CoreBlackboardEntries;
import de.evoal.core.api.cdi.ConfigurationValue;
-import de.evoal.core.api.ea.codec.CustomCodec;
-import de.evoal.core.api.ea.constraints.strategies.RepairStrategy;
-import de.evoal.core.api.ea.fitness.FitnessFunction;
+import de.evoal.core.ea.api.codec.CustomCodec;
+import de.evoal.core.ea.api.constraints.strategies.RepairStrategy;
import de.evoal.core.api.properties.PropertiesSpecification;
import de.evoal.core.api.utils.LanguageHelper;
-import de.evoal.core.main.ea.constraints.constraint.utils.ConfigurationUtils;
+import de.evoal.core.ea.main.constraints.constraint.utils.ConfigurationUtils;
import de.evoal.languages.model.instance.*;
import javax.enterprise.context.ApplicationScoped;
@@ -27,9 +27,9 @@ import java.util.stream.Collectors;
public class JeneticsConstraintProducer {
@Produces
public List<io.jenetics.engine.Constraint> create(
- final @ConfigurationValue(entry = CoreBlackboardEntries.OPTIMISATION_CONFIGURATION, access = "algorithm.handlers") Array handlerConfigurations,
- final @Named("optimization-function-output") PropertiesSpecification optimizationSpec,
- final @Named("optimization-function") FitnessFunction function,
+ final @ConfigurationValue(entry = CoreBlackboardEntries.OPTIMISATION_CONFIGURATION, access = "algorithm.handlers") Instance [] handlerConfigurations,
+ final @Named("optimisation-function-output") PropertiesSpecification optimisationSpec,
+ final @Named("optimisation-function") OptimisationFunction function,
final CustomCodec codec,
final Constraints constraints,
final CalculationFactory factory) {
@@ -51,7 +51,7 @@ public class JeneticsConstraintProducer {
final RepairStrategy rStrategy = BeanFactory.create(repairConfiguration.getDefinition().getName(), RepairStrategy.class)
.init(repairConfiguration);
- return new JeneticsConstraintStrategy(cStrategy, codec, function, optimizationSpec, rStrategy);
+ return new JeneticsConstraintStrategy(cStrategy, codec, function, optimisationSpec, rStrategy);
})
.collect(Collectors.toList());
}
diff --git a/src/core/de.evoal.core.main/src/main/java/de/evoal/core/main/ea/constraints/constraint/strategies/constraint/JeneticsConstraintStrategy.java b/src/core/de.evoal.core.ea/src/main/java/de/evoal/core/ea/main/constraints/constraint/strategies/constraint/JeneticsConstraintStrategy.java
similarity index 70%
rename from src/core/de.evoal.core.main/src/main/java/de/evoal/core/main/ea/constraints/constraint/strategies/constraint/JeneticsConstraintStrategy.java
rename to src/core/de.evoal.core.ea/src/main/java/de/evoal/core/ea/main/constraints/constraint/strategies/constraint/JeneticsConstraintStrategy.java
index 30672a6d..8791ae18 100644
--- a/src/core/de.evoal.core.main/src/main/java/de/evoal/core/main/ea/constraints/constraint/strategies/constraint/JeneticsConstraintStrategy.java
+++ b/src/core/de.evoal.core.ea/src/main/java/de/evoal/core/ea/main/constraints/constraint/strategies/constraint/JeneticsConstraintStrategy.java
@@ -1,10 +1,10 @@
-package de.evoal.core.main.ea.constraints.constraint.strategies.constraint;
+package de.evoal.core.ea.main.constraints.constraint.strategies.constraint;
-import de.evoal.core.api.ea.constraints.calculation.CalculationStrategy;
-import de.evoal.core.api.ea.constraints.strategies.HandlingStrategy;
-import de.evoal.core.api.ea.codec.CustomCodec;
-import de.evoal.core.api.ea.constraints.strategies.RepairStrategy;
-import de.evoal.core.api.ea.fitness.FitnessFunction;
+import de.evoal.core.api.optimisation.OptimisationFunction;
+import de.evoal.core.ea.api.constraints.calculation.CalculationStrategy;
+import de.evoal.core.ea.api.constraints.strategies.HandlingStrategy;
+import de.evoal.core.ea.api.codec.CustomCodec;
+import de.evoal.core.ea.api.constraints.strategies.RepairStrategy;
import de.evoal.core.api.properties.Properties;
import de.evoal.core.api.properties.PropertiesSpecification;
import io.jenetics.Gene;
@@ -17,11 +17,11 @@ public class JeneticsConstraintStrategy<
private final CalculationStrategy calculation;
private final CustomCodec<G> codec;
- private final FitnessFunction function;
+ private final OptimisationFunction function;
private final PropertiesSpecification fitnessSpec;
private final RepairStrategy repair;
- public JeneticsConstraintStrategy(final CalculationStrategy calculation, final CustomCodec<G> codec, final FitnessFunction function, final PropertiesSpecification fitnessSpec, final RepairStrategy repair) {
+ public JeneticsConstraintStrategy(final CalculationStrategy calculation, final CustomCodec<G> codec, final OptimisationFunction function, final PropertiesSpecification fitnessSpec, final RepairStrategy repair) {
this.calculation = calculation;
this.codec = codec;
this.function = function;
diff --git a/src/core/de.evoal.core.main/src/main/java/de/evoal/core/main/ea/constraints/constraint/strategies/constraint/RandomGenotypeStrategy.java b/src/core/de.evoal.core.ea/src/main/java/de/evoal/core/ea/main/constraints/constraint/strategies/constraint/RandomGenotypeStrategy.java
similarity index 84%
rename from src/core/de.evoal.core.main/src/main/java/de/evoal/core/main/ea/constraints/constraint/strategies/constraint/RandomGenotypeStrategy.java
rename to src/core/de.evoal.core.ea/src/main/java/de/evoal/core/ea/main/constraints/constraint/strategies/constraint/RandomGenotypeStrategy.java
index ea28d1f9..56cd879c 100644
--- a/src/core/de.evoal.core.main/src/main/java/de/evoal/core/main/ea/constraints/constraint/strategies/constraint/RandomGenotypeStrategy.java
+++ b/src/core/de.evoal.core.ea/src/main/java/de/evoal/core/ea/main/constraints/constraint/strategies/constraint/RandomGenotypeStrategy.java
@@ -1,6 +1,6 @@
-package de.evoal.core.main.ea.constraints.constraint.strategies.constraint;
+package de.evoal.core.ea.main.constraints.constraint.strategies.constraint;
-import de.evoal.core.api.ea.constraints.strategies.RepairStrategy;
+import de.evoal.core.ea.api.constraints.strategies.RepairStrategy;
import de.evoal.languages.model.instance.Instance;
import io.jenetics.Gene;
import io.jenetics.Genotype;
diff --git a/src/core/de.evoal.core.main/src/main/java/de/evoal/core/main/ea/constraints/constraint/strategies/fitness/MalusFunctionProducer.java b/src/core/de.evoal.core.ea/src/main/java/de/evoal/core/ea/main/constraints/constraint/strategies/fitness/MalusFunctionProducer.java
similarity index 88%
rename from src/core/de.evoal.core.main/src/main/java/de/evoal/core/main/ea/constraints/constraint/strategies/fitness/MalusFunctionProducer.java
rename to src/core/de.evoal.core.ea/src/main/java/de/evoal/core/ea/main/constraints/constraint/strategies/fitness/MalusFunctionProducer.java
index 57371661..5b687c95 100644
--- a/src/core/de.evoal.core.main/src/main/java/de/evoal/core/main/ea/constraints/constraint/strategies/fitness/MalusFunctionProducer.java
+++ b/src/core/de.evoal.core.ea/src/main/java/de/evoal/core/ea/main/constraints/constraint/strategies/fitness/MalusFunctionProducer.java
@@ -1,13 +1,13 @@
-package de.evoal.core.main.ea.constraints.constraint.strategies.fitness;
+package de.evoal.core.ea.main.constraints.constraint.strategies.fitness;
-import de.evoal.core.api.ea.constraints.model.Constraint;
-import de.evoal.core.api.ea.constraints.model.Constraints;
-import de.evoal.core.api.ea.constraints.strategies.fitness.MalusForFitnessStrategy;
-import de.evoal.core.api.ea.constraints.strategies.fitness.MalusFunction;
+import de.evoal.core.ea.api.constraints.model.Constraint;
+import de.evoal.core.ea.api.constraints.model.Constraints;
+import de.evoal.core.ea.api.constraints.strategies.fitness.MalusForFitnessStrategy;
+import de.evoal.core.ea.api.constraints.strategies.fitness.MalusFunction;
import de.evoal.core.api.properties.info.PropertiesDependencies;
import de.evoal.core.api.utils.LanguageHelper;
-import de.evoal.core.api.ea.constraints.calculation.CalculationFactory;
-import de.evoal.core.api.ea.constraints.calculation.CalculationStrategy;
+import de.evoal.core.ea.api.constraints.calculation.CalculationFactory;
+import de.evoal.core.ea.api.constraints.calculation.CalculationStrategy;
import de.evoal.core.api.board.CoreBlackboardEntries;
import de.evoal.core.api.cdi.ConfigurationValue;
import de.evoal.core.api.properties.PropertiesSpecification;
@@ -15,8 +15,8 @@ import de.evoal.core.api.properties.PropertySpecification;
import javax.enterprise.context.ApplicationScoped;
import javax.enterprise.inject.Produces;
-import de.evoal.core.main.ea.constraints.constraint.strategies.fitness.internal.MalusForFitnessFunction;
-import de.evoal.core.main.ea.constraints.constraint.utils.ConfigurationUtils;
+import de.evoal.core.ea.main.constraints.constraint.strategies.fitness.internal.MalusForFitnessFunction;
+import de.evoal.core.ea.main.constraints.constraint.utils.ConfigurationUtils;
import de.evoal.languages.model.instance.*;
import org.apache.commons.math3.util.Pair;
@@ -28,9 +28,9 @@ import java.util.stream.Collectors;
public class MalusFunctionProducer {
@ApplicationScoped @Produces
public MalusForFitnessStrategy create(
- final @ConfigurationValue(entry = CoreBlackboardEntries.OPTIMISATION_CONFIGURATION, access = "algorithm.handlers") Array handlers,
- final @Named("optimization-function-input") PropertiesSpecification source,
- final @Named("optimization-function-output") PropertiesSpecification target,
+ final @ConfigurationValue(entry = CoreBlackboardEntries.OPTIMISATION_CONFIGURATION, access = "algorithm.handlers") Instance [] handlers,
+ final @Named("optimisation-function-input") PropertiesSpecification source,
+ final @Named("optimisation-function-output") PropertiesSpecification target,
final @Named("output-dependencies") PropertiesDependencies dependencies,
final Constraints constraints,
final CalculationFactory factory) {
diff --git a/src/core/de.evoal.core.main/src/main/java/de/evoal/core/main/ea/constraints/constraint/strategies/fitness/internal/MalusForFitnessFunction.java b/src/core/de.evoal.core.ea/src/main/java/de/evoal/core/ea/main/constraints/constraint/strategies/fitness/internal/MalusForFitnessFunction.java
similarity index 77%
rename from src/core/de.evoal.core.main/src/main/java/de/evoal/core/main/ea/constraints/constraint/strategies/fitness/internal/MalusForFitnessFunction.java
rename to src/core/de.evoal.core.ea/src/main/java/de/evoal/core/ea/main/constraints/constraint/strategies/fitness/internal/MalusForFitnessFunction.java
index 8d637e5f..c1af10b4 100644
--- a/src/core/de.evoal.core.main/src/main/java/de/evoal/core/main/ea/constraints/constraint/strategies/fitness/internal/MalusForFitnessFunction.java
+++ b/src/core/de.evoal.core.ea/src/main/java/de/evoal/core/ea/main/constraints/constraint/strategies/fitness/internal/MalusForFitnessFunction.java
@@ -1,8 +1,8 @@
-package de.evoal.core.main.ea.constraints.constraint.strategies.fitness.internal;
+package de.evoal.core.ea.main.constraints.constraint.strategies.fitness.internal;
-import de.evoal.core.api.ea.constraints.model.Constraint;
-import de.evoal.core.api.ea.constraints.model.ConstraintResult;
-import de.evoal.core.api.ea.constraints.strategies.fitness.MalusFunction;
+import de.evoal.core.ea.api.constraints.model.Constraint;
+import de.evoal.core.ea.api.constraints.model.ConstraintResult;
+import de.evoal.core.ea.api.constraints.strategies.fitness.MalusFunction;
import de.evoal.core.api.properties.Properties;
import de.evoal.core.api.utils.LanguageHelper;
import de.evoal.languages.model.instance.Instance;
diff --git a/src/core/de.evoal.core.main/src/main/java/de/evoal/core/main/ea/constraints/constraint/utils/ArithmeticNumberOperations.java b/src/core/de.evoal.core.ea/src/main/java/de/evoal/core/ea/main/constraints/constraint/utils/ArithmeticNumberOperations.java
similarity index 98%
rename from src/core/de.evoal.core.main/src/main/java/de/evoal/core/main/ea/constraints/constraint/utils/ArithmeticNumberOperations.java
rename to src/core/de.evoal.core.ea/src/main/java/de/evoal/core/ea/main/constraints/constraint/utils/ArithmeticNumberOperations.java
index 79702bbb..d0590f75 100644
--- a/src/core/de.evoal.core.main/src/main/java/de/evoal/core/main/ea/constraints/constraint/utils/ArithmeticNumberOperations.java
+++ b/src/core/de.evoal.core.ea/src/main/java/de/evoal/core/ea/main/constraints/constraint/utils/ArithmeticNumberOperations.java
@@ -1,4 +1,4 @@
-package de.evoal.core.main.ea.constraints.constraint.utils;
+package de.evoal.core.ea.main.constraints.constraint.utils;
import de.evoal.core.api.utils.Requirements;
diff --git a/src/core/de.evoal.core.main/src/main/java/de/evoal/core/main/ea/constraints/constraint/utils/ConfigurationUtils.java b/src/core/de.evoal.core.ea/src/main/java/de/evoal/core/ea/main/constraints/constraint/utils/ConfigurationUtils.java
similarity index 73%
rename from src/core/de.evoal.core.main/src/main/java/de/evoal/core/main/ea/constraints/constraint/utils/ConfigurationUtils.java
rename to src/core/de.evoal.core.ea/src/main/java/de/evoal/core/ea/main/constraints/constraint/utils/ConfigurationUtils.java
index 546a87f2..feae4351 100644
--- a/src/core/de.evoal.core.main/src/main/java/de/evoal/core/main/ea/constraints/constraint/utils/ConfigurationUtils.java
+++ b/src/core/de.evoal.core.ea/src/main/java/de/evoal/core/ea/main/constraints/constraint/utils/ConfigurationUtils.java
@@ -1,11 +1,10 @@
-package de.evoal.core.main.ea.constraints.constraint.utils;
+package de.evoal.core.ea.main.constraints.constraint.utils;
import de.evoal.core.api.utils.LanguageHelper;
import de.evoal.languages.model.instance.Array;
-import de.evoal.languages.model.instance.Attribute;
import de.evoal.languages.model.instance.Instance;
-import java.util.ArrayList;
+import java.util.Arrays;
import java.util.List;
import java.util.stream.Collectors;
@@ -13,18 +12,16 @@ public final class ConfigurationUtils {
private ConfigurationUtils() {
}
- public static List<Instance> findConstraintHandlerByHandlingStrategy(final Array handlers, final String name) {
- return handlers.getValues()
- .stream()
+ public static List<Instance> findConstraintHandlerByHandlingStrategy(final Instance [] handlers, final String name) {
+ return Arrays.stream(handlers)
.map(Instance.class::cast)
.filter(LanguageHelper.filterInstanceByType("constraint-handler"))
.filter(LanguageHelper.filterByAttributesInstanceType("constraint-handling", name))
.collect(Collectors.toList());
}
- public static Instance findConstraintHandlerByHandlingStrategyAndCategory(final Array handlers, final String name, final String category) {
- return handlers.getValues()
- .stream()
+ public static Instance findConstraintHandlerByHandlingStrategyAndCategory(final Instance [] handlers, final String name, final String category) {
+ return Arrays.stream(handlers)
.map(Instance.class::cast)
.filter(LanguageHelper.filterInstanceByType("constraint-handler"))
.filter(LanguageHelper.filterByAttributesInstanceType("constraint-handling", name))
diff --git a/src/core/de.evoal.core.main/src/main/java/de/evoal/core/main/ea/constraints/correlation/CorrelationsProducer.java b/src/core/de.evoal.core.ea/src/main/java/de/evoal/core/ea/main/constraints/correlation/CorrelationsProducer.java
similarity index 87%
rename from src/core/de.evoal.core.main/src/main/java/de/evoal/core/main/ea/constraints/correlation/CorrelationsProducer.java
rename to src/core/de.evoal.core.ea/src/main/java/de/evoal/core/ea/main/constraints/correlation/CorrelationsProducer.java
index 0739e389..b26acb27 100644
--- a/src/core/de.evoal.core.main/src/main/java/de/evoal/core/main/ea/constraints/correlation/CorrelationsProducer.java
+++ b/src/core/de.evoal.core.ea/src/main/java/de/evoal/core/ea/main/constraints/correlation/CorrelationsProducer.java
@@ -1,17 +1,17 @@
-package de.evoal.core.main.ea.constraints.correlation;
+package de.evoal.core.ea.main.constraints.correlation;
-import de.evoal.core.api.ea.codec.CustomCodec;
-import de.evoal.core.api.ea.constraints.model.DataConstraints;
+import de.evoal.core.ea.api.codec.CustomCodec;
+import de.evoal.core.ea.api.constraints.model.DataConstraints;
import de.evoal.core.api.properties.PropertiesSpecification;
import javax.enterprise.context.ApplicationScoped;
import javax.enterprise.inject.Produces;
-import de.evoal.core.main.ea.constraints.correlation.el.AstHelper;
-import de.evoal.core.main.ea.constraints.el.ElHelper;
-import de.evoal.core.api.ea.correlations.Correlation;
-import de.evoal.core.api.ea.correlations.Correlations;
-import de.evoal.core.api.ea.correlations.RangedCorrelation;
-import de.evoal.core.main.ea.constraints.el.LogHelper;
+import de.evoal.core.ea.main.constraints.correlation.el.AstHelper;
+import de.evoal.core.ea.main.constraints.el.ElHelper;
+import de.evoal.core.ea.api.correlations.Correlation;
+import de.evoal.core.ea.api.correlations.Correlations;
+import de.evoal.core.ea.api.correlations.RangedCorrelation;
+import de.evoal.core.ea.main.constraints.el.LogHelper;
import de.evoal.languages.model.ddl.DataDescription;
import de.evoal.languages.model.el.Call;
import lombok.extern.slf4j.Slf4j;
diff --git a/src/core/de.evoal.core.main/src/main/java/de/evoal/core/main/ea/constraints/correlation/el/AstHelper.java b/src/core/de.evoal.core.ea/src/main/java/de/evoal/core/ea/main/constraints/correlation/el/AstHelper.java
similarity index 73%
rename from src/core/de.evoal.core.main/src/main/java/de/evoal/core/main/ea/constraints/correlation/el/AstHelper.java
rename to src/core/de.evoal.core.ea/src/main/java/de/evoal/core/ea/main/constraints/correlation/el/AstHelper.java
index 6df67471..231244b5 100644
--- a/src/core/de.evoal.core.main/src/main/java/de/evoal/core/main/ea/constraints/correlation/el/AstHelper.java
+++ b/src/core/de.evoal.core.ea/src/main/java/de/evoal/core/ea/main/constraints/correlation/el/AstHelper.java
@@ -1,9 +1,8 @@
-package de.evoal.core.main.ea.constraints.correlation.el;
+package de.evoal.core.ea.main.constraints.correlation.el;
import de.evoal.core.api.properties.PropertiesSpecification;
-import de.evoal.core.api.properties.PropertySpecification;
-import de.evoal.core.main.ea.constraints.el.DataReferenceSwitch;
-import de.evoal.core.api.ea.correlations.Range;
+import de.evoal.core.ea.main.constraints.el.DataReferenceSwitch;
+import de.evoal.core.ea.api.correlations.Range;
import de.evoal.languages.model.ddl.DataDescription;
import de.evoal.languages.model.el.Expression;
diff --git a/src/core/de.evoal.core.main/src/main/java/de/evoal/core/main/ea/constraints/correlation/el/RangeSwitch.java b/src/core/de.evoal.core.ea/src/main/java/de/evoal/core/ea/main/constraints/correlation/el/RangeSwitch.java
similarity index 96%
rename from src/core/de.evoal.core.main/src/main/java/de/evoal/core/main/ea/constraints/correlation/el/RangeSwitch.java
rename to src/core/de.evoal.core.ea/src/main/java/de/evoal/core/ea/main/constraints/correlation/el/RangeSwitch.java
index 33f382bd..771538cf 100644
--- a/src/core/de.evoal.core.main/src/main/java/de/evoal/core/main/ea/constraints/correlation/el/RangeSwitch.java
+++ b/src/core/de.evoal.core.ea/src/main/java/de/evoal/core/ea/main/constraints/correlation/el/RangeSwitch.java
@@ -1,7 +1,7 @@
-package de.evoal.core.main.ea.constraints.correlation.el;
+package de.evoal.core.ea.main.constraints.correlation.el;
-import de.evoal.core.main.ea.constraints.el.ElHelper;
-import de.evoal.core.api.ea.correlations.Range;
+import de.evoal.core.ea.main.constraints.el.ElHelper;
+import de.evoal.core.ea.api.correlations.Range;
import de.evoal.languages.model.el.*;
import de.evoal.languages.model.el.util.ELSwitch;
diff --git a/src/core/de.evoal.core.main/src/main/java/de/evoal/core/main/ea/constraints/deviation/DeviationProducer.java b/src/core/de.evoal.core.ea/src/main/java/de/evoal/core/ea/main/constraints/deviation/DeviationProducer.java
similarity index 81%
rename from src/core/de.evoal.core.main/src/main/java/de/evoal/core/main/ea/constraints/deviation/DeviationProducer.java
rename to src/core/de.evoal.core.ea/src/main/java/de/evoal/core/ea/main/constraints/deviation/DeviationProducer.java
index 2c9562be..ca30adc0 100644
--- a/src/core/de.evoal.core.main/src/main/java/de/evoal/core/main/ea/constraints/deviation/DeviationProducer.java
+++ b/src/core/de.evoal.core.ea/src/main/java/de/evoal/core/ea/main/constraints/deviation/DeviationProducer.java
@@ -1,25 +1,20 @@
-package de.evoal.core.main.ea.constraints.deviation;
+package de.evoal.core.ea.main.constraints.deviation;
-import de.evoal.core.api.ea.codec.CustomCodec;
-import de.evoal.core.api.ea.constraints.model.DataConstraints;
+import de.evoal.core.ea.api.codec.CustomCodec;
+import de.evoal.core.ea.api.constraints.model.DataConstraints;
import de.evoal.core.api.properties.PropertiesSpecification;
import de.evoal.core.api.properties.PropertySpecification;
import javax.enterprise.context.ApplicationScoped;
import javax.enterprise.inject.Produces;
-import javax.inject.Named;
-
-import de.evoal.core.main.ea.constraints.deviation.model.Deviation;
-import de.evoal.core.main.ea.constraints.deviation.model.Deviations;
-import de.evoal.core.main.ea.constraints.el.ElHelper;
-import de.evoal.core.main.ea.constraints.el.LogHelper;
+import de.evoal.core.ea.main.constraints.deviation.model.Deviation;
+import de.evoal.core.ea.main.constraints.deviation.model.Deviations;
+import de.evoal.core.ea.main.constraints.el.ElHelper;
+import de.evoal.core.ea.main.constraints.el.LogHelper;
import de.evoal.languages.model.ddl.DataDescription;
import de.evoal.languages.model.el.Call;
-import de.evoal.languages.model.el.Expression;
-import de.evoal.languages.model.el.FunctionName;
import lombok.extern.slf4j.Slf4j;
-import java.util.Collection;
import java.util.Objects;
import java.util.Optional;
diff --git a/src/core/de.evoal.core.main/src/main/java/de/evoal/core/main/ea/constraints/deviation/model/Deviation.java b/src/core/de.evoal.core.ea/src/main/java/de/evoal/core/ea/main/constraints/deviation/model/Deviation.java
similarity index 86%
rename from src/core/de.evoal.core.main/src/main/java/de/evoal/core/main/ea/constraints/deviation/model/Deviation.java
rename to src/core/de.evoal.core.ea/src/main/java/de/evoal/core/ea/main/constraints/deviation/model/Deviation.java
index 8ad2917b..7ae4d4a8 100644
--- a/src/core/de.evoal.core.main/src/main/java/de/evoal/core/main/ea/constraints/deviation/model/Deviation.java
+++ b/src/core/de.evoal.core.ea/src/main/java/de/evoal/core/ea/main/constraints/deviation/model/Deviation.java
@@ -1,4 +1,4 @@
-package de.evoal.core.main.ea.constraints.deviation.model;
+package de.evoal.core.ea.main.constraints.deviation.model;
import de.evoal.core.api.properties.PropertySpecification;
import lombok.Data;
diff --git a/src/core/de.evoal.core.main/src/main/java/de/evoal/core/main/ea/constraints/deviation/model/Deviations.java b/src/core/de.evoal.core.ea/src/main/java/de/evoal/core/ea/main/constraints/deviation/model/Deviations.java
similarity index 94%
rename from src/core/de.evoal.core.main/src/main/java/de/evoal/core/main/ea/constraints/deviation/model/Deviations.java
rename to src/core/de.evoal.core.ea/src/main/java/de/evoal/core/ea/main/constraints/deviation/model/Deviations.java
index 26f2e235..b2e839b0 100644
--- a/src/core/de.evoal.core.main/src/main/java/de/evoal/core/main/ea/constraints/deviation/model/Deviations.java
+++ b/src/core/de.evoal.core.ea/src/main/java/de/evoal/core/ea/main/constraints/deviation/model/Deviations.java
@@ -1,4 +1,4 @@
-package de.evoal.core.main.ea.constraints.deviation.model;
+package de.evoal.core.ea.main.constraints.deviation.model;
import de.evoal.core.api.properties.PropertiesSpecification;
import de.evoal.core.api.properties.PropertySpecification;
diff --git a/src/core/de.evoal.core.main/src/main/java/de/evoal/core/main/ea/constraints/el/CallSwitch.java b/src/core/de.evoal.core.ea/src/main/java/de/evoal/core/ea/main/constraints/el/CallSwitch.java
similarity index 98%
rename from src/core/de.evoal.core.main/src/main/java/de/evoal/core/main/ea/constraints/el/CallSwitch.java
rename to src/core/de.evoal.core.ea/src/main/java/de/evoal/core/ea/main/constraints/el/CallSwitch.java
index c1007a8e..1569b034 100644
--- a/src/core/de.evoal.core.main/src/main/java/de/evoal/core/main/ea/constraints/el/CallSwitch.java
+++ b/src/core/de.evoal.core.ea/src/main/java/de/evoal/core/ea/main/constraints/el/CallSwitch.java
@@ -1,4 +1,4 @@
-package de.evoal.core.main.ea.constraints.el;
+package de.evoal.core.ea.main.constraints.el;
import de.evoal.languages.model.el.*;
import de.evoal.languages.model.el.util.ELSwitch;
diff --git a/src/core/de.evoal.core.main/src/main/java/de/evoal/core/main/ea/constraints/el/DataReferenceSwitch.java b/src/core/de.evoal.core.ea/src/main/java/de/evoal/core/ea/main/constraints/el/DataReferenceSwitch.java
similarity index 98%
rename from src/core/de.evoal.core.main/src/main/java/de/evoal/core/main/ea/constraints/el/DataReferenceSwitch.java
rename to src/core/de.evoal.core.ea/src/main/java/de/evoal/core/ea/main/constraints/el/DataReferenceSwitch.java
index 4a01d1a0..37abff7c 100644
--- a/src/core/de.evoal.core.main/src/main/java/de/evoal/core/main/ea/constraints/el/DataReferenceSwitch.java
+++ b/src/core/de.evoal.core.ea/src/main/java/de/evoal/core/ea/main/constraints/el/DataReferenceSwitch.java
@@ -1,4 +1,4 @@
-package de.evoal.core.main.ea.constraints.el;
+package de.evoal.core.ea.main.constraints.el;
import de.evoal.languages.model.ddl.DataDescription;
import de.evoal.languages.model.ddl.DataReference;
diff --git a/src/core/de.evoal.core.main/src/main/java/de/evoal/core/main/ea/constraints/el/ElHelper.java b/src/core/de.evoal.core.ea/src/main/java/de/evoal/core/ea/main/constraints/el/ElHelper.java
similarity index 94%
rename from src/core/de.evoal.core.main/src/main/java/de/evoal/core/main/ea/constraints/el/ElHelper.java
rename to src/core/de.evoal.core.ea/src/main/java/de/evoal/core/ea/main/constraints/el/ElHelper.java
index 8913ecda..b3a3981c 100644
--- a/src/core/de.evoal.core.main/src/main/java/de/evoal/core/main/ea/constraints/el/ElHelper.java
+++ b/src/core/de.evoal.core.ea/src/main/java/de/evoal/core/ea/main/constraints/el/ElHelper.java
@@ -1,4 +1,4 @@
-package de.evoal.core.main.ea.constraints.el;
+package de.evoal.core.ea.main.constraints.el;
import de.evoal.languages.model.ddl.DataDescription;
import de.evoal.languages.model.el.Call;
diff --git a/src/core/de.evoal.core.main/src/main/java/de/evoal/core/main/ea/constraints/el/LogHelper.java b/src/core/de.evoal.core.ea/src/main/java/de/evoal/core/ea/main/constraints/el/LogHelper.java
similarity index 94%
rename from src/core/de.evoal.core.main/src/main/java/de/evoal/core/main/ea/constraints/el/LogHelper.java
rename to src/core/de.evoal.core.ea/src/main/java/de/evoal/core/ea/main/constraints/el/LogHelper.java
index 3fec549b..4d0d70e4 100644
--- a/src/core/de.evoal.core.main/src/main/java/de/evoal/core/main/ea/constraints/el/LogHelper.java
+++ b/src/core/de.evoal.core.ea/src/main/java/de/evoal/core/ea/main/constraints/el/LogHelper.java
@@ -1,4 +1,4 @@
-package de.evoal.core.main.ea.constraints.el;
+package de.evoal.core.ea.main.constraints.el;
import de.evoal.languages.model.ddl.dsl.DataDescriptionLanguageStandaloneSetup;
import de.evoal.languages.model.el.Call;
diff --git a/src/core/de.evoal.core.main/src/main/java/de/evoal/core/main/ea/constraints/el/NumberSwitch.java b/src/core/de.evoal.core.ea/src/main/java/de/evoal/core/ea/main/constraints/el/NumberSwitch.java
similarity index 98%
rename from src/core/de.evoal.core.main/src/main/java/de/evoal/core/main/ea/constraints/el/NumberSwitch.java
rename to src/core/de.evoal.core.ea/src/main/java/de/evoal/core/ea/main/constraints/el/NumberSwitch.java
index ccb30d01..b2f107e2 100644
--- a/src/core/de.evoal.core.main/src/main/java/de/evoal/core/main/ea/constraints/el/NumberSwitch.java
+++ b/src/core/de.evoal.core.ea/src/main/java/de/evoal/core/ea/main/constraints/el/NumberSwitch.java
@@ -1,4 +1,4 @@
-package de.evoal.core.main.ea.constraints.el;
+package de.evoal.core.ea.main.constraints.el;
import de.evoal.languages.model.el.*;
import de.evoal.languages.model.el.util.ELSwitch;
diff --git a/src/core/de.evoal.core.main/src/main/java/de/evoal/core/main/ea/constraints/el/StringSwitch.java b/src/core/de.evoal.core.ea/src/main/java/de/evoal/core/ea/main/constraints/el/StringSwitch.java
similarity index 98%
rename from src/core/de.evoal.core.main/src/main/java/de/evoal/core/main/ea/constraints/el/StringSwitch.java
rename to src/core/de.evoal.core.ea/src/main/java/de/evoal/core/ea/main/constraints/el/StringSwitch.java
index df183422..1dc2d79e 100644
--- a/src/core/de.evoal.core.main/src/main/java/de/evoal/core/main/ea/constraints/el/StringSwitch.java
+++ b/src/core/de.evoal.core.ea/src/main/java/de/evoal/core/ea/main/constraints/el/StringSwitch.java
@@ -1,4 +1,4 @@
-package de.evoal.core.main.ea.constraints.el;
+package de.evoal.core.ea.main.constraints.el;
import de.evoal.languages.model.el.*;
import de.evoal.languages.model.el.util.ELSwitch;
diff --git a/src/core/de.evoal.core.main/src/main/java/de/evoal/core/main/ea/constraints/el/ValueReferenceSwitch.java b/src/core/de.evoal.core.ea/src/main/java/de/evoal/core/ea/main/constraints/el/ValueReferenceSwitch.java
similarity index 98%
rename from src/core/de.evoal.core.main/src/main/java/de/evoal/core/main/ea/constraints/el/ValueReferenceSwitch.java
rename to src/core/de.evoal.core.ea/src/main/java/de/evoal/core/ea/main/constraints/el/ValueReferenceSwitch.java
index b7e4876d..0172ec43 100644
--- a/src/core/de.evoal.core.main/src/main/java/de/evoal/core/main/ea/constraints/el/ValueReferenceSwitch.java
+++ b/src/core/de.evoal.core.ea/src/main/java/de/evoal/core/ea/main/constraints/el/ValueReferenceSwitch.java
@@ -1,4 +1,4 @@
-package de.evoal.core.main.ea.constraints.el;
+package de.evoal.core.ea.main.constraints.el;
import de.evoal.core.api.utils.Requirements;
import de.evoal.languages.model.ddl.DataDescription;
diff --git a/src/core/de.evoal.core.main/src/main/java/de/evoal/core/main/ea/fitness/DistanceFitness.java b/src/core/de.evoal.core.ea/src/main/java/de/evoal/core/ea/main/fitness/DistanceFitness.java
similarity index 91%
rename from src/core/de.evoal.core.main/src/main/java/de/evoal/core/main/ea/fitness/DistanceFitness.java
rename to src/core/de.evoal.core.ea/src/main/java/de/evoal/core/ea/main/fitness/DistanceFitness.java
index d7cc3feb..31a289cb 100644
--- a/src/core/de.evoal.core.main/src/main/java/de/evoal/core/main/ea/fitness/DistanceFitness.java
+++ b/src/core/de.evoal.core.ea/src/main/java/de/evoal/core/ea/main/fitness/DistanceFitness.java
@@ -1,9 +1,9 @@
-package de.evoal.core.main.ea.fitness;
+package de.evoal.core.ea.main.fitness;
import de.evoal.core.api.board.Blackboard;
import de.evoal.core.api.board.CoreBlackboardEntries;
-import de.evoal.core.api.ea.fitness.FitnessDecorator;
-import de.evoal.core.api.ea.fitness.FitnessFunction;
+import de.evoal.core.api.optimisation.OptimisationFunction;
+import de.evoal.core.api.optimisation.OptimisationFunctionDecorator;
import de.evoal.core.api.properties.Properties;
import de.evoal.core.api.properties.PropertiesSpecification;
import de.evoal.core.api.utils.Requirements;
@@ -17,7 +17,7 @@ import javax.inject.Named;
@Dependent
@Named("distance")
@Slf4j
-public class DistanceFitness extends FitnessDecorator {
+public class DistanceFitness extends OptimisationFunctionDecorator {
@Inject
private Blackboard board;
@@ -47,7 +47,7 @@ public class DistanceFitness extends FitnessDecorator {
}
@Override
- public FitnessFunction init(final Instance config) {
+ public OptimisationFunction init(final Instance config) {
super.init(config);
final Attribute target = config.findAttribute("target");
diff --git a/src/core/de.evoal.core.main/src/main/java/de/evoal/core/main/ea/fitness/FitnessFactory.java b/src/core/de.evoal.core.ea/src/main/java/de/evoal/core/ea/main/fitness/FitnessFactory.java
similarity index 72%
rename from src/core/de.evoal.core.main/src/main/java/de/evoal/core/main/ea/fitness/FitnessFactory.java
rename to src/core/de.evoal.core.ea/src/main/java/de/evoal/core/ea/main/fitness/FitnessFactory.java
index c5ce9b63..0f6fc428 100644
--- a/src/core/de.evoal.core.main/src/main/java/de/evoal/core/main/ea/fitness/FitnessFactory.java
+++ b/src/core/de.evoal.core.ea/src/main/java/de/evoal/core/ea/main/fitness/FitnessFactory.java
@@ -1,19 +1,19 @@
-package de.evoal.core.main.ea.fitness;
+package de.evoal.core.ea.main.fitness;
import de.evoal.core.api.board.CoreBlackboardEntries;
+import de.evoal.core.api.cdi.BeanFactory;
import de.evoal.core.api.cdi.ConfigurationValue;
import javax.enterprise.context.ApplicationScoped;
import javax.enterprise.context.Dependent;
import javax.enterprise.inject.Produces;
-import de.evoal.core.api.ea.fitness.FitnessFunction;
-import de.evoal.core.api.ea.fitness.comparator.FitnessComparator;
-import de.evoal.core.api.ea.fitness.comparator.FitnessValue;
+import de.evoal.core.api.optimisation.OptimisationFunction;
+import de.evoal.core.api.optimisation.OptimisationValueComparator;
+import de.evoal.core.api.optimisation.OptimisationValue;
import de.evoal.core.api.properties.Properties;
import de.evoal.languages.model.instance.Instance;
import lombok.extern.slf4j.Slf4j;
-import org.apache.deltaspike.core.api.provider.BeanProvider;
@ApplicationScoped
@Slf4j
@@ -38,16 +38,16 @@ public class FitnessFactory {
log.info("Creating fitness function {} and using comparator {}.", fitnessName, comparatorName);
- final FitnessFunction ff = BeanProvider.getContextualReference(fitnessName, false, FitnessFunction.class)
+ final OptimisationFunction ff = BeanFactory.create(fitnessName, OptimisationFunction.class)
.init(fitnessConfig);
- final FitnessComparator cmp = BeanProvider.getContextualReference(comparatorName, false, FitnessComparator.class)
+ final OptimisationValueComparator cmp = BeanFactory.create(comparatorName, OptimisationValueComparator.class)
.init(comparatorConfig);
return new JeneticsFitnessFunction() {
@Override
- public FitnessValue apply(final Properties properties) {
+ public OptimisationValue apply(final Properties properties) {
double [] values = ff.evaluate(properties);
- return cmp.compare(values);
+ return cmp.toValue(values);
}
};
}
diff --git a/src/core/de.evoal.core.main/src/main/java/de/evoal/core/main/ea/fitness/JeneticsFitnessFunction.java b/src/core/de.evoal.core.ea/src/main/java/de/evoal/core/ea/main/fitness/JeneticsFitnessFunction.java
similarity index 55%
rename from src/core/de.evoal.core.main/src/main/java/de/evoal/core/main/ea/fitness/JeneticsFitnessFunction.java
rename to src/core/de.evoal.core.ea/src/main/java/de/evoal/core/ea/main/fitness/JeneticsFitnessFunction.java
index 5da57327..385fddba 100644
--- a/src/core/de.evoal.core.main/src/main/java/de/evoal/core/main/ea/fitness/JeneticsFitnessFunction.java
+++ b/src/core/de.evoal.core.ea/src/main/java/de/evoal/core/ea/main/fitness/JeneticsFitnessFunction.java
@@ -1,9 +1,9 @@
-package de.evoal.core.main.ea.fitness;
+package de.evoal.core.ea.main.fitness;
-import de.evoal.core.api.ea.fitness.comparator.FitnessValue;
+import de.evoal.core.api.optimisation.OptimisationValue;
import de.evoal.core.api.properties.Properties;
import java.util.function.Function;
-public interface JeneticsFitnessFunction extends Function<Properties, FitnessValue> {
+public interface JeneticsFitnessFunction extends Function<Properties, OptimisationValue> {
}
diff --git a/src/core/de.evoal.core.main/src/main/java/de/evoal/core/main/ea/fitness/MalusFitness.java b/src/core/de.evoal.core.ea/src/main/java/de/evoal/core/ea/main/fitness/MalusFitness.java
similarity index 60%
rename from src/core/de.evoal.core.main/src/main/java/de/evoal/core/main/ea/fitness/MalusFitness.java
rename to src/core/de.evoal.core.ea/src/main/java/de/evoal/core/ea/main/fitness/MalusFitness.java
index 6a822987..9e864dcd 100644
--- a/src/core/de.evoal.core.main/src/main/java/de/evoal/core/main/ea/fitness/MalusFitness.java
+++ b/src/core/de.evoal.core.ea/src/main/java/de/evoal/core/ea/main/fitness/MalusFitness.java
@@ -1,14 +1,9 @@
-package de.evoal.core.main.ea.fitness;
+package de.evoal.core.ea.main.fitness;
-import de.evoal.core.api.board.Blackboard;
-import de.evoal.core.api.board.BlackboardEntry;
-import de.evoal.core.api.ea.constraints.strategies.fitness.MalusForFitnessStrategy;
-import de.evoal.core.api.ea.fitness.FitnessDecorator;
-import de.evoal.core.api.ea.fitness.FitnessFunction;
+import de.evoal.core.ea.api.constraints.strategies.fitness.MalusForFitnessStrategy;
+import de.evoal.core.api.optimisation.OptimisationFunctionDecorator;
import de.evoal.core.api.properties.Properties;
import de.evoal.core.api.properties.PropertiesSpecification;
-import de.evoal.core.api.utils.Requirements;
-import de.evoal.languages.model.instance.*;
import lombok.extern.slf4j.Slf4j;
import javax.enterprise.context.Dependent;
@@ -18,10 +13,10 @@ import javax.inject.Named;
@Dependent
@Named("malus")
@Slf4j
-public class MalusFitness extends FitnessDecorator {
+public class MalusFitness extends OptimisationFunctionDecorator {
@Inject
- @Named("optimization-function-output")
+ @Named("optimisation-function-output")
private PropertiesSpecification fitnessSpecification;
@Inject
diff --git a/src/core/de.evoal.core.main/src/main/java/de/evoal/core/main/ea/initial/InitialPopulationFactory.java b/src/core/de.evoal.core.ea/src/main/java/de/evoal/core/ea/main/initial/InitialPopulationFactory.java
similarity index 86%
rename from src/core/de.evoal.core.main/src/main/java/de/evoal/core/main/ea/initial/InitialPopulationFactory.java
rename to src/core/de.evoal.core.ea/src/main/java/de/evoal/core/ea/main/initial/InitialPopulationFactory.java
index 859982a0..139cba96 100644
--- a/src/core/de.evoal.core.main/src/main/java/de/evoal/core/main/ea/initial/InitialPopulationFactory.java
+++ b/src/core/de.evoal.core.ea/src/main/java/de/evoal/core/ea/main/initial/InitialPopulationFactory.java
@@ -1,9 +1,9 @@
-package de.evoal.core.main.ea.initial;
+package de.evoal.core.ea.main.initial;
import de.evoal.core.api.board.CoreBlackboardEntries;
import de.evoal.core.api.cdi.BeanFactory;
import de.evoal.core.api.cdi.ConfigurationValue;
-import de.evoal.core.api.ea.initial.InitialPopulation;
+import de.evoal.core.ea.api.initial.InitialPopulation;
import de.evoal.languages.model.instance.Instance;
import javax.enterprise.context.Dependent;
@@ -15,7 +15,7 @@ import javax.inject.Named;
public class InitialPopulationFactory {
@Inject
- @ConfigurationValue(entry = CoreBlackboardEntries.OPTIMISATION_CONFIGURATION, access = "algorithm.initialization")
+ @ConfigurationValue(entry = CoreBlackboardEntries.OPTIMISATION_CONFIGURATION, access = "algorithm.initialisation")
private Instance initialization;
/**
diff --git a/src/core/de.evoal.core.main/src/main/java/de/evoal/core/main/ea/initial/RandomInitialPopulation.java b/src/core/de.evoal.core.ea/src/main/java/de/evoal/core/ea/main/initial/RandomInitialPopulation.java
similarity index 77%
rename from src/core/de.evoal.core.main/src/main/java/de/evoal/core/main/ea/initial/RandomInitialPopulation.java
rename to src/core/de.evoal.core.ea/src/main/java/de/evoal/core/ea/main/initial/RandomInitialPopulation.java
index 9ea64a72..21140c0d 100644
--- a/src/core/de.evoal.core.main/src/main/java/de/evoal/core/main/ea/initial/RandomInitialPopulation.java
+++ b/src/core/de.evoal.core.ea/src/main/java/de/evoal/core/ea/main/initial/RandomInitialPopulation.java
@@ -1,14 +1,11 @@
-package de.evoal.core.main.ea.initial;
+package de.evoal.core.ea.main.initial;
-import de.evoal.core.api.ea.initial.InitialPopulation;
+import de.evoal.core.ea.api.initial.InitialPopulation;
import de.evoal.languages.model.instance.Instance;
import io.jenetics.Gene;
import io.jenetics.engine.Engine;
import io.jenetics.engine.EvolutionStream;
-import javax.enterprise.context.Dependent;
-import javax.inject.Named;
-
public class RandomInitialPopulation<G extends Gene<?, G>, C extends Comparable<C>> implements InitialPopulation<G, C> {
@Override
public InitialPopulation init(final Instance initialization) {
diff --git a/src/core/de.evoal.core.main/src/main/java/de/evoal/core/main/ea/initial/RandomProducer.java b/src/core/de.evoal.core.ea/src/main/java/de/evoal/core/ea/main/initial/RandomProducer.java
similarity index 85%
rename from src/core/de.evoal.core.main/src/main/java/de/evoal/core/main/ea/initial/RandomProducer.java
rename to src/core/de.evoal.core.ea/src/main/java/de/evoal/core/ea/main/initial/RandomProducer.java
index 16840785..fb5ca8ad 100644
--- a/src/core/de.evoal.core.main/src/main/java/de/evoal/core/main/ea/initial/RandomProducer.java
+++ b/src/core/de.evoal.core.ea/src/main/java/de/evoal/core/ea/main/initial/RandomProducer.java
@@ -1,9 +1,9 @@
-package de.evoal.core.main.ea.initial;
+package de.evoal.core.ea.main.initial;
import de.evoal.core.api.board.CoreBlackboardEntries;
import de.evoal.core.api.cdi.BeanFactory;
import de.evoal.core.api.cdi.ConfigurationValue;
-import de.evoal.core.api.ea.initial.InitialPopulation;
+import de.evoal.core.ea.api.initial.InitialPopulation;
import de.evoal.languages.model.instance.Instance;
import javax.enterprise.context.ApplicationScoped;
@@ -20,7 +20,7 @@ public class RandomProducer {
@Produces
@Dependent
@Named("random")
- public InitialPopulation create(@ConfigurationValue(entry = CoreBlackboardEntries.OPTIMISATION_CONFIGURATION, access = "algorithm.initialization") Instance initialization) {
+ public InitialPopulation create(@ConfigurationValue(entry = CoreBlackboardEntries.OPTIMISATION_CONFIGURATION, access = "algorithm.initialisation") Instance initialization) {
final InitialPopulation population = new RandomInitialPopulation();
BeanFactory.injectFields(population);
population.init(initialization);
diff --git a/src/core/de.evoal.core.main/src/main/java/de/evoal/core/main/jenetics/AbstractBoundedChromosome.java b/src/core/de.evoal.core.ea/src/main/java/de/evoal/core/ea/main/jenetics/AbstractBoundedChromosome.java
similarity index 98%
rename from src/core/de.evoal.core.main/src/main/java/de/evoal/core/main/jenetics/AbstractBoundedChromosome.java
rename to src/core/de.evoal.core.ea/src/main/java/de/evoal/core/ea/main/jenetics/AbstractBoundedChromosome.java
index 4b56a149..d002182e 100644
--- a/src/core/de.evoal.core.main/src/main/java/de/evoal/core/main/jenetics/AbstractBoundedChromosome.java
+++ b/src/core/de.evoal.core.ea/src/main/java/de/evoal/core/ea/main/jenetics/AbstractBoundedChromosome.java
@@ -1,4 +1,4 @@
-package de.evoal.core.main.jenetics;
+package de.evoal.core.ea.main.jenetics;
import static io.jenetics.internal.util.Hashes.hash;
import java.util.Objects;
diff --git a/src/core/de.evoal.core.main/src/main/java/de/evoal/core/main/jenetics/BitChromosome.java b/src/core/de.evoal.core.ea/src/main/java/de/evoal/core/ea/main/jenetics/BitChromosome.java
similarity index 99%
rename from src/core/de.evoal.core.main/src/main/java/de/evoal/core/main/jenetics/BitChromosome.java
rename to src/core/de.evoal.core.ea/src/main/java/de/evoal/core/ea/main/jenetics/BitChromosome.java
index f3d7eec0..a0333d81 100644
--- a/src/core/de.evoal.core.main/src/main/java/de/evoal/core/main/jenetics/BitChromosome.java
+++ b/src/core/de.evoal.core.ea/src/main/java/de/evoal/core/ea/main/jenetics/BitChromosome.java
@@ -1,4 +1,4 @@
-package de.evoal.core.main.jenetics;
+package de.evoal.core.ea.main.jenetics;
import static java.lang.Math.min;
import static java.util.Objects.requireNonNull;
diff --git a/src/core/de.evoal.core.main/src/main/java/de/evoal/core/main/jenetics/BitHelper.java b/src/core/de.evoal.core.ea/src/main/java/de/evoal/core/ea/main/jenetics/BitHelper.java
similarity index 97%
rename from src/core/de.evoal.core.main/src/main/java/de/evoal/core/main/jenetics/BitHelper.java
rename to src/core/de.evoal.core.ea/src/main/java/de/evoal/core/ea/main/jenetics/BitHelper.java
index 5b476c49..9e05d584 100644
--- a/src/core/de.evoal.core.main/src/main/java/de/evoal/core/main/jenetics/BitHelper.java
+++ b/src/core/de.evoal.core.ea/src/main/java/de/evoal/core/ea/main/jenetics/BitHelper.java
@@ -1,4 +1,4 @@
-package de.evoal.core.main.jenetics;
+package de.evoal.core.ea.main.jenetics;
import org.decimal4j.api.ImmutableDecimal;
import org.decimal4j.factory.Factories;
diff --git a/src/core/de.evoal.core.main/src/main/java/de/evoal/core/main/jenetics/BoundedBitChromosome.java b/src/core/de.evoal.core.ea/src/main/java/de/evoal/core/ea/main/jenetics/BoundedBitChromosome.java
similarity index 96%
rename from src/core/de.evoal.core.main/src/main/java/de/evoal/core/main/jenetics/BoundedBitChromosome.java
rename to src/core/de.evoal.core.ea/src/main/java/de/evoal/core/ea/main/jenetics/BoundedBitChromosome.java
index b2ea8a64..c3a7c117 100644
--- a/src/core/de.evoal.core.main/src/main/java/de/evoal/core/main/jenetics/BoundedBitChromosome.java
+++ b/src/core/de.evoal.core.ea/src/main/java/de/evoal/core/ea/main/jenetics/BoundedBitChromosome.java
@@ -1,4 +1,4 @@
-package de.evoal.core.main.jenetics;
+package de.evoal.core.ea.main.jenetics;
import io.jenetics.BitGene;
import io.jenetics.util.ISeq;
diff --git a/src/core/de.evoal.core.main/src/main/java/de/evoal/core/main/jenetics/BoundedDoubleChromosome.java b/src/core/de.evoal.core.ea/src/main/java/de/evoal/core/ea/main/jenetics/BoundedDoubleChromosome.java
similarity index 99%
rename from src/core/de.evoal.core.main/src/main/java/de/evoal/core/main/jenetics/BoundedDoubleChromosome.java
rename to src/core/de.evoal.core.ea/src/main/java/de/evoal/core/ea/main/jenetics/BoundedDoubleChromosome.java
index d0999989..d765bbd5 100644
--- a/src/core/de.evoal.core.main/src/main/java/de/evoal/core/main/jenetics/BoundedDoubleChromosome.java
+++ b/src/core/de.evoal.core.ea/src/main/java/de/evoal/core/ea/main/jenetics/BoundedDoubleChromosome.java
@@ -1,4 +1,4 @@
-package de.evoal.core.main.jenetics;
+package de.evoal.core.ea.main.jenetics;
import io.jenetics.*;
import io.jenetics.util.DoubleRange;
diff --git a/src/core/de.evoal.core.main/src/main/java/de/evoal/core/main/jenetics/BoundedDoubleGene.java b/src/core/de.evoal.core.ea/src/main/java/de/evoal/core/ea/main/jenetics/BoundedDoubleGene.java
similarity index 99%
rename from src/core/de.evoal.core.main/src/main/java/de/evoal/core/main/jenetics/BoundedDoubleGene.java
rename to src/core/de.evoal.core.ea/src/main/java/de/evoal/core/ea/main/jenetics/BoundedDoubleGene.java
index e5bce3eb..b15307ec 100644
--- a/src/core/de.evoal.core.main/src/main/java/de/evoal/core/main/jenetics/BoundedDoubleGene.java
+++ b/src/core/de.evoal.core.ea/src/main/java/de/evoal/core/ea/main/jenetics/BoundedDoubleGene.java
@@ -1,4 +1,4 @@
-package de.evoal.core.main.jenetics;
+package de.evoal.core.ea.main.jenetics;
import io.jenetics.DoubleGene;
import io.jenetics.NumericGene;
diff --git a/src/core/de.evoal.core.main/src/main/java/de/evoal/core/main/jenetics/BoundedIntegerChromosome.java b/src/core/de.evoal.core.ea/src/main/java/de/evoal/core/ea/main/jenetics/BoundedIntegerChromosome.java
similarity index 99%
rename from src/core/de.evoal.core.main/src/main/java/de/evoal/core/main/jenetics/BoundedIntegerChromosome.java
rename to src/core/de.evoal.core.ea/src/main/java/de/evoal/core/ea/main/jenetics/BoundedIntegerChromosome.java
index 2421adcb..db4a17bd 100644
--- a/src/core/de.evoal.core.main/src/main/java/de/evoal/core/main/jenetics/BoundedIntegerChromosome.java
+++ b/src/core/de.evoal.core.ea/src/main/java/de/evoal/core/ea/main/jenetics/BoundedIntegerChromosome.java
@@ -1,8 +1,7 @@
-package de.evoal.core.main.jenetics;
+package de.evoal.core.ea.main.jenetics;
import io.jenetics.DoubleGene;
import io.jenetics.NumericChromosome;
-import io.jenetics.util.DoubleRange;
import io.jenetics.util.ISeq;
import io.jenetics.util.IntRange;
diff --git a/src/core/de.evoal.core.main/src/main/java/de/evoal/core/main/jenetics/BoundedIntegerGene.java b/src/core/de.evoal.core.ea/src/main/java/de/evoal/core/ea/main/jenetics/BoundedIntegerGene.java
similarity index 99%
rename from src/core/de.evoal.core.main/src/main/java/de/evoal/core/main/jenetics/BoundedIntegerGene.java
rename to src/core/de.evoal.core.ea/src/main/java/de/evoal/core/ea/main/jenetics/BoundedIntegerGene.java
index d29ed1f1..64192d0d 100644
--- a/src/core/de.evoal.core.main/src/main/java/de/evoal/core/main/jenetics/BoundedIntegerGene.java
+++ b/src/core/de.evoal.core.ea/src/main/java/de/evoal/core/ea/main/jenetics/BoundedIntegerGene.java
@@ -1,4 +1,4 @@
-package de.evoal.core.main.jenetics;
+package de.evoal.core.ea.main.jenetics;
import io.jenetics.DoubleGene;
import io.jenetics.NumericGene;
diff --git a/src/core/de.evoal.core.main/src/main/java/de/evoal/core/main/jenetics/BoundedOperations.java b/src/core/de.evoal.core.ea/src/main/java/de/evoal/core/ea/main/jenetics/BoundedOperations.java
similarity index 95%
rename from src/core/de.evoal.core.main/src/main/java/de/evoal/core/main/jenetics/BoundedOperations.java
rename to src/core/de.evoal.core.ea/src/main/java/de/evoal/core/ea/main/jenetics/BoundedOperations.java
index 7d513c65..4dcb0e28 100644
--- a/src/core/de.evoal.core.main/src/main/java/de/evoal/core/main/jenetics/BoundedOperations.java
+++ b/src/core/de.evoal.core.ea/src/main/java/de/evoal/core/ea/main/jenetics/BoundedOperations.java
@@ -1,4 +1,4 @@
-package de.evoal.core.main.jenetics;
+package de.evoal.core.ea.main.jenetics;
import io.jenetics.util.RandomRegistry;
diff --git a/src/core/de.evoal.core.ea/src/main/java/de/evoal/core/ea/main/jenetics/ConstraintList.java b/src/core/de.evoal.core.ea/src/main/java/de/evoal/core/ea/main/jenetics/ConstraintList.java
new file mode 100644
index 00000000..30207b91
--- /dev/null
+++ b/src/core/de.evoal.core.ea/src/main/java/de/evoal/core/ea/main/jenetics/ConstraintList.java
@@ -0,0 +1,32 @@
+package de.evoal.core.ea.main.jenetics;
+
+import de.evoal.core.api.optimisation.OptimisationValue;
+import io.jenetics.Gene;
+import io.jenetics.Phenotype;
+import io.jenetics.engine.Constraint;
+
+import java.util.List;
+
+public class ConstraintList<G extends Gene<?, G>> implements Constraint<G, OptimisationValue> {
+ private final List<Constraint<G, OptimisationValue>> constraints;
+
+ public ConstraintList(final List<Constraint<G, OptimisationValue>> constraints) {
+ this.constraints = constraints;
+ }
+
+ @Override
+ public boolean test(final Phenotype<G, OptimisationValue> individual) {
+ return constraints.stream().allMatch(c -> c.test(individual));
+ }
+
+ @Override
+ public Phenotype<G, OptimisationValue> repair(Phenotype<G, OptimisationValue> individual, long generation) {
+ Phenotype<G, OptimisationValue> phenotype = individual;
+
+ for(final Constraint<G, OptimisationValue> c : constraints) {
+ phenotype = c.repair(phenotype, generation);
+ }
+
+ return phenotype;
+ }
+}
diff --git a/src/core/de.evoal.core.main/src/main/java/de/evoal/core/main/jenetics/DecimalFactory.java b/src/core/de.evoal.core.ea/src/main/java/de/evoal/core/ea/main/jenetics/DecimalFactory.java
similarity index 92%
rename from src/core/de.evoal.core.main/src/main/java/de/evoal/core/main/jenetics/DecimalFactory.java
rename to src/core/de.evoal.core.ea/src/main/java/de/evoal/core/ea/main/jenetics/DecimalFactory.java
index fd9e1160..8b0f34f0 100644
--- a/src/core/de.evoal.core.main/src/main/java/de/evoal/core/main/jenetics/DecimalFactory.java
+++ b/src/core/de.evoal.core.ea/src/main/java/de/evoal/core/ea/main/jenetics/DecimalFactory.java
@@ -1,4 +1,4 @@
-package de.evoal.core.main.jenetics;
+package de.evoal.core.ea.main.jenetics;
import org.decimal4j.api.ImmutableDecimal;
import org.decimal4j.factory.Factories;
diff --git a/src/core/de.evoal.core.main/src/main/java/de/evoal/core/main/jenetics/GrayBoundedBitChromosome.java b/src/core/de.evoal.core.ea/src/main/java/de/evoal/core/ea/main/jenetics/GrayBoundedBitChromosome.java
similarity index 97%
rename from src/core/de.evoal.core.main/src/main/java/de/evoal/core/main/jenetics/GrayBoundedBitChromosome.java
rename to src/core/de.evoal.core.ea/src/main/java/de/evoal/core/ea/main/jenetics/GrayBoundedBitChromosome.java
index bf1398b8..ba255604 100644
--- a/src/core/de.evoal.core.main/src/main/java/de/evoal/core/main/jenetics/GrayBoundedBitChromosome.java
+++ b/src/core/de.evoal.core.ea/src/main/java/de/evoal/core/ea/main/jenetics/GrayBoundedBitChromosome.java
@@ -1,4 +1,4 @@
-package de.evoal.core.main.jenetics;
+package de.evoal.core.ea.main.jenetics;
import io.jenetics.util.RandomRegistry;
diff --git a/src/core/de.evoal.core.main/src/main/java/de/evoal/core/main/jenetics/GrayHelper.java b/src/core/de.evoal.core.ea/src/main/java/de/evoal/core/ea/main/jenetics/GrayHelper.java
similarity index 96%
rename from src/core/de.evoal.core.main/src/main/java/de/evoal/core/main/jenetics/GrayHelper.java
rename to src/core/de.evoal.core.ea/src/main/java/de/evoal/core/ea/main/jenetics/GrayHelper.java
index 65fe1161..a44369f0 100644
--- a/src/core/de.evoal.core.main/src/main/java/de/evoal/core/main/jenetics/GrayHelper.java
+++ b/src/core/de.evoal.core.ea/src/main/java/de/evoal/core/ea/main/jenetics/GrayHelper.java
@@ -1,4 +1,4 @@
-package de.evoal.core.main.jenetics;
+package de.evoal.core.ea.main.jenetics;
/**
* Helper class for the gray encoding
diff --git a/src/core/de.evoal.core.main/src/main/java/de/evoal/core/main/jenetics/NaiveBoundedBitChromosome.java b/src/core/de.evoal.core.ea/src/main/java/de/evoal/core/ea/main/jenetics/NaiveBoundedBitChromosome.java
similarity index 97%
rename from src/core/de.evoal.core.main/src/main/java/de/evoal/core/main/jenetics/NaiveBoundedBitChromosome.java
rename to src/core/de.evoal.core.ea/src/main/java/de/evoal/core/ea/main/jenetics/NaiveBoundedBitChromosome.java
index 20ae13a7..e6d2be3e 100644
--- a/src/core/de.evoal.core.main/src/main/java/de/evoal/core/main/jenetics/NaiveBoundedBitChromosome.java
+++ b/src/core/de.evoal.core.ea/src/main/java/de/evoal/core/ea/main/jenetics/NaiveBoundedBitChromosome.java
@@ -1,4 +1,4 @@
-package de.evoal.core.main.jenetics;
+package de.evoal.core.ea.main.jenetics;
import io.jenetics.util.RandomRegistry;
diff --git a/src/core/de.evoal.core.main/src/main/java/de/evoal/core/main/jenetics/VariableChromosome.java b/src/core/de.evoal.core.ea/src/main/java/de/evoal/core/ea/main/jenetics/VariableChromosome.java
similarity index 98%
rename from src/core/de.evoal.core.main/src/main/java/de/evoal/core/main/jenetics/VariableChromosome.java
rename to src/core/de.evoal.core.ea/src/main/java/de/evoal/core/ea/main/jenetics/VariableChromosome.java
index f180cfb8..2300fde2 100644
--- a/src/core/de.evoal.core.main/src/main/java/de/evoal/core/main/jenetics/VariableChromosome.java
+++ b/src/core/de.evoal.core.ea/src/main/java/de/evoal/core/ea/main/jenetics/VariableChromosome.java
@@ -1,4 +1,4 @@
-package de.evoal.core.main.jenetics;
+package de.evoal.core.ea.main.jenetics;
import static java.lang.String.format;
import static java.util.Objects.requireNonNull;
diff --git a/src/core/de.evoal.core.main/src/main/java/de/evoal/core/main/producer/DataConstraintProducer.java b/src/core/de.evoal.core.ea/src/main/java/de/evoal/core/ea/main/producer/DataConstraintProducer.java
similarity index 92%
rename from src/core/de.evoal.core.main/src/main/java/de/evoal/core/main/producer/DataConstraintProducer.java
rename to src/core/de.evoal.core.ea/src/main/java/de/evoal/core/ea/main/producer/DataConstraintProducer.java
index f9a5a649..0e4adb7b 100644
--- a/src/core/de.evoal.core.main/src/main/java/de/evoal/core/main/producer/DataConstraintProducer.java
+++ b/src/core/de.evoal.core.ea/src/main/java/de/evoal/core/ea/main/producer/DataConstraintProducer.java
@@ -1,11 +1,10 @@
-package de.evoal.core.main.producer;
+package de.evoal.core.ea.main.producer;
-import de.evoal.core.api.ea.constraints.model.DataConstraints;
+import de.evoal.core.ea.api.constraints.model.DataConstraints;
import de.evoal.languages.model.ddl.DataDescription;
import de.evoal.languages.model.ddl.DataDescriptionModel;
import de.evoal.languages.model.ddl.TypedDataDescription;
import de.evoal.languages.model.ol.OptimisationModel;
-import de.evoal.languages.model.el.Expression;
import de.evoal.languages.model.instance.DataReference;
import org.eclipse.emf.common.util.TreeIterator;
import org.eclipse.emf.ecore.EObject;
@@ -13,8 +12,6 @@ import org.eclipse.emf.ecore.EObject;
import javax.enterprise.context.ApplicationScoped;
import javax.enterprise.context.Dependent;
import javax.enterprise.inject.Produces;
-import javax.inject.Named;
-import java.util.Collection;
import java.util.HashSet;
import java.util.Objects;
import java.util.Set;
diff --git a/src/core/de.evoal.core.main/src/main/java/de/evoal/core/main/ea/producer/OptimizingFunctionProducer.java b/src/core/de.evoal.core.ea/src/main/java/de/evoal/core/ea/main/producer/OptimisingFunctionProducer.java
similarity index 76%
rename from src/core/de.evoal.core.main/src/main/java/de/evoal/core/main/ea/producer/OptimizingFunctionProducer.java
rename to src/core/de.evoal.core.ea/src/main/java/de/evoal/core/ea/main/producer/OptimisingFunctionProducer.java
index 77900cf3..6643c5f4 100644
--- a/src/core/de.evoal.core.main/src/main/java/de/evoal/core/main/ea/producer/OptimizingFunctionProducer.java
+++ b/src/core/de.evoal.core.ea/src/main/java/de/evoal/core/ea/main/producer/OptimisingFunctionProducer.java
@@ -1,14 +1,14 @@
-package de.evoal.core.main.ea.producer;
+package de.evoal.core.ea.main.producer;
import de.evoal.core.api.board.CoreBlackboardEntries;
+import de.evoal.core.api.cdi.BeanFactory;
import de.evoal.core.api.cdi.ConfigurationValue;
-import de.evoal.core.api.ea.fitness.FitnessFunction;
+import de.evoal.core.api.optimisation.OptimisationFunction;
import de.evoal.core.api.properties.PropertiesSpecification;
import de.evoal.languages.model.instance.Array;
import de.evoal.languages.model.instance.Attribute;
import de.evoal.languages.model.instance.DataReference;
import de.evoal.languages.model.instance.Instance;
-import org.apache.deltaspike.core.api.provider.BeanProvider;
import javax.enterprise.context.ApplicationScoped;
import javax.enterprise.context.Dependent;
@@ -16,35 +16,35 @@ import javax.enterprise.inject.Produces;
import javax.inject.Named;
@ApplicationScoped
-public class OptimizingFunctionProducer {
+public class OptimisingFunctionProducer {
@Produces
@Dependent
- @Named("optimization-function-input")
+ @Named("optimisation-function-input")
public PropertiesSpecification createInputSpec(final @Named("genotype-specification") PropertiesSpecification genotypeSpec) {
return genotypeSpec;
}
@Produces
@ApplicationScoped
- @Named("optimization-function-configuration")
+ @Named("optimisation-function-configuration")
public Instance find(final @ConfigurationValue(entry = CoreBlackboardEntries.OPTIMISATION_CONFIGURATION, access = "algorithm.fitness") Instance fitnessConfiguration) {
return findInner(fitnessConfiguration);
}
@Produces
@Dependent
- @Named("optimization-function-output")
- public PropertiesSpecification createOutputSpec(final @Named("optimization-function-configuration") Instance configuration) {
+ @Named("optimisation-function-output")
+ public PropertiesSpecification createOutputSpec(final @Named("optimisation-function-configuration") Instance configuration) {
return toSpecification(configuration);
}
@Produces
@ApplicationScoped
- @Named("optimization-function")
- private FitnessFunction create(final @Named("optimization-function-configuration") Instance configuration) {
+ @Named("optimisation-function")
+ private OptimisationFunction create(final @Named("optimisation-function-configuration") Instance configuration) {
final String fitnessName = configuration.getDefinition().getName();
- return BeanProvider.getContextualReference(fitnessName, false, FitnessFunction.class)
+ return BeanFactory.create(fitnessName, OptimisationFunction.class)
.init(configuration);
}
diff --git a/src/core/de.evoal.core.main/src/main/java/de/evoal/core/main/producer/PropertiesBoundariesProducer.java b/src/core/de.evoal.core.ea/src/main/java/de/evoal/core/ea/main/producer/PropertiesBoundariesProducer.java
similarity index 72%
rename from src/core/de.evoal.core.main/src/main/java/de/evoal/core/main/producer/PropertiesBoundariesProducer.java
rename to src/core/de.evoal.core.ea/src/main/java/de/evoal/core/ea/main/producer/PropertiesBoundariesProducer.java
index 10bb824a..8bcd5595 100644
--- a/src/core/de.evoal.core.main/src/main/java/de/evoal/core/main/producer/PropertiesBoundariesProducer.java
+++ b/src/core/de.evoal.core.ea/src/main/java/de/evoal/core/ea/main/producer/PropertiesBoundariesProducer.java
@@ -1,17 +1,13 @@
-package de.evoal.core.main.producer;
+package de.evoal.core.ea.main.producer;
-import de.evoal.core.api.ea.constraints.model.DataConstraints;
+import de.evoal.core.ea.api.constraints.model.DataConstraints;
import de.evoal.core.api.properties.PropertiesSpecification;
-import de.evoal.core.api.properties.PropertySpecification;
import de.evoal.core.api.properties.info.PropertiesBoundaries;
-import de.evoal.core.api.properties.info.PropertiesRanges;
-import de.evoal.core.main.ea.constraints.constraint.ast.BoundaryIdentifier;
-import de.evoal.languages.model.el.Expression;
+import de.evoal.core.ea.main.constraints.constraint.ast.BoundaryIdentifier;
import javax.enterprise.context.ApplicationScoped;
import javax.enterprise.inject.Produces;
import javax.inject.Named;
-import java.util.Collection;
@ApplicationScoped
public class PropertiesBoundariesProducer {
diff --git a/src/core/de.evoal.core.main/src/main/java/de/evoal/core/main/ea/producer/SelectorFactory.java b/src/core/de.evoal.core.ea/src/main/java/de/evoal/core/ea/main/producer/SelectorFactory.java
similarity index 99%
rename from src/core/de.evoal.core.main/src/main/java/de/evoal/core/main/ea/producer/SelectorFactory.java
rename to src/core/de.evoal.core.ea/src/main/java/de/evoal/core/ea/main/producer/SelectorFactory.java
index 17433b5e..2b201bd1 100644
--- a/src/core/de.evoal.core.main/src/main/java/de/evoal/core/main/ea/producer/SelectorFactory.java
+++ b/src/core/de.evoal.core.ea/src/main/java/de/evoal/core/ea/main/producer/SelectorFactory.java
@@ -1,4 +1,4 @@
-package de.evoal.core.main.ea.producer;
+package de.evoal.core.ea.main.producer;
import de.evoal.core.api.board.CoreBlackboardEntries;
import de.evoal.core.api.cdi.ConfigurationValue;
diff --git a/src/core/de.evoal.core.main/src/main/java/de/evoal/core/main/ea/search/EvolutionaryAlgorithmSearch.java b/src/core/de.evoal.core.ea/src/main/java/de/evoal/core/ea/main/search/EvolutionaryAlgorithmSearch.java
similarity index 71%
rename from src/core/de.evoal.core.main/src/main/java/de/evoal/core/main/ea/search/EvolutionaryAlgorithmSearch.java
rename to src/core/de.evoal.core.ea/src/main/java/de/evoal/core/ea/main/search/EvolutionaryAlgorithmSearch.java
index 23a6c383..66596c25 100644
--- a/src/core/de.evoal.core.main/src/main/java/de/evoal/core/main/ea/search/EvolutionaryAlgorithmSearch.java
+++ b/src/core/de.evoal.core.ea/src/main/java/de/evoal/core/ea/main/search/EvolutionaryAlgorithmSearch.java
@@ -1,4 +1,4 @@
-package de.evoal.core.main.ea.search;
+package de.evoal.core.ea.main.search;
import java.io.File;
import java.time.Duration;
@@ -10,16 +10,17 @@ import de.evoal.core.api.board.CoreBlackboardEntries;
import de.evoal.core.api.board.Blackboard;
import de.evoal.core.api.cdi.BlackboardValue;
import de.evoal.core.api.cdi.ConfigurationValue;
-import de.evoal.core.api.ea.initial.InitialPopulation;
-import de.evoal.core.api.search.OptimisationAlgorithm;
+import de.evoal.core.ea.api.initial.InitialPopulation;
+import de.evoal.core.api.optimisation.OptimisationAlgorithm;
import de.evoal.core.api.utils.LanguageHelper;
-import de.evoal.core.api.ea.fitness.comparator.FitnessValue;
-
-import de.evoal.core.api.statistics.StatisticsWriter;
-import de.evoal.core.main.ea.alterer.AltererFactory;
-import de.evoal.core.main.ea.codec.DynamicCodec;
-import de.evoal.core.main.ea.fitness.JeneticsFitnessFunction;
-import de.evoal.core.main.jenetics.ConstraintList;
+import de.evoal.core.api.optimisation.OptimisationValue;
+
+import de.evoal.core.api.statistics.writer.StatisticsWriter;
+import de.evoal.core.ea.main.fitness.JeneticsFitnessFunction;
+import de.evoal.core.ea.main.jenetics.ConstraintList;
+import de.evoal.core.ea.main.alterer.AltererFactory;
+import de.evoal.core.ea.main.codec.DynamicCodec;
+import de.evoal.core.ea.main.statistics.JeneticsStatisticsWriter;
import de.evoal.languages.model.instance.Array;
import de.evoal.languages.model.instance.Attribute;
import de.evoal.languages.model.instance.Value;
@@ -65,14 +66,14 @@ public class EvolutionaryAlgorithmSearch implements OptimisationAlgorithm {
private int sizeOfPopulation;
@Inject
- @ConfigurationValue(entry = CoreBlackboardEntries.OPTIMISATION_CONFIGURATION, access = "algorithm.maximize")
+ @ConfigurationValue(entry = CoreBlackboardEntries.OPTIMISATION_CONFIGURATION, access = "algorithm.maximise")
private Boolean maximize;
@Inject
@ConfigurationValue(entry = CoreBlackboardEntries.OPTIMISATION_CONFIGURATION, access = "algorithm.maximum-age")
private int maximumAge;
- private final Map<String, List<Alterer<?, FitnessValue>>> alterers = new HashMap<>();
+ private final Map<String, List<Alterer<?, OptimisationValue>>> alterers = new HashMap<>();
@Inject
private DynamicCodec encoding;
@@ -109,9 +110,9 @@ public class EvolutionaryAlgorithmSearch implements OptimisationAlgorithm {
public void run() {
setup();
- final Constraint<?, FitnessValue> constraint = new ConstraintList(constraints.get());
+ final Constraint<?, OptimisationValue> constraint = new ConstraintList(constraints.get());
- final Engine<?, FitnessValue> engine= Engine.builder(this.fitnessFunction, encoding)
+ final Engine<?, OptimisationValue> engine= Engine.builder(this.fitnessFunction, encoding)
.alterers(flattenAltererMap())
.offspringSelector(this.offspringSelector)
.survivorsSelector(this.survivorSelector)
@@ -122,14 +123,15 @@ public class EvolutionaryAlgorithmSearch implements OptimisationAlgorithm {
.executor(executor)
.build();
- EvolutionStatistics<FitnessValue, MinMax<FitnessValue>> statistics = EvolutionStatistics.ofComparable();
- EvolutionStream<?, FitnessValue> initialStream = initalStream.create(engine);
+ EvolutionStatistics<OptimisationValue, MinMax<OptimisationValue>> statistics = EvolutionStatistics.ofComparable();
+ EvolutionStream<?, OptimisationValue> initialStream = initalStream.create(engine);
+ JeneticsStatisticsWriter writer = new JeneticsStatisticsWriter(this.statistics);
- final EvolutionResult<?, FitnessValue> result
+ final EvolutionResult<?, OptimisationValue> result
= initialStream.limit(Limits.byFixedGeneration(numberOfGenerations))
.limit(Limits.byExecutionTime(Duration.ofMinutes(5)))
// .parallel()
- .peek(this.statistics::add)
+ .peek(writer::add)
.peek(statistics)
.collect(EvolutionResult.toBestEvolutionResult());
this.statistics.write();
@@ -158,15 +160,15 @@ public class EvolutionaryAlgorithmSearch implements OptimisationAlgorithm {
}
}
- private <G extends Gene<?, G>> Alterer<?, FitnessValue> flattenAltererMap() {
- Alterer<G, FitnessValue> result = null;
+ private <G extends Gene<?, G>> Alterer<?, OptimisationValue> flattenAltererMap() {
+ Alterer<G, OptimisationValue> result = null;
- for(final Map.Entry<String, List<Alterer<?, FitnessValue>>> entry : alterers.entrySet()) {
- for(final Alterer<?, FitnessValue> e : entry.getValue()) {
+ for(final Map.Entry<String, List<Alterer<?, OptimisationValue>>> entry : alterers.entrySet()) {
+ for(final Alterer<?, OptimisationValue> e : entry.getValue()) {
if(result == null) {
- result = (Alterer<G, FitnessValue>) e;
+ result = (Alterer<G, OptimisationValue>) e;
} else {
- result = Alterer.of(result, (Alterer<G, FitnessValue>) e);
+ result = Alterer.of(result, (Alterer<G, OptimisationValue>) e);
}
}
}
diff --git a/src/core/de.evoal.core.ea/src/main/java/de/evoal/core/ea/main/statistics/CandidateAdapter.java b/src/core/de.evoal.core.ea/src/main/java/de/evoal/core/ea/main/statistics/CandidateAdapter.java
new file mode 100644
index 00000000..9836c62e
--- /dev/null
+++ b/src/core/de.evoal.core.ea/src/main/java/de/evoal/core/ea/main/statistics/CandidateAdapter.java
@@ -0,0 +1,63 @@
+package de.evoal.core.ea.main.statistics;
+
+import de.evoal.core.api.optimisation.OptimisationValue;
+import de.evoal.core.api.properties.Properties;
+import de.evoal.core.api.statistics.Candidate;
+import de.evoal.core.ea.main.codec.DynamicCodec;
+import io.jenetics.Phenotype;
+
+import javax.enterprise.context.Dependent;
+import javax.inject.Inject;
+
+/**
+ * An adapter, c.f. GOF: adapter pattern, for adapting Jenetic's {@link Phenotype} to
+ * EvoAl's {@link Candidate}.
+ */
+@Dependent
+public class CandidateAdapter implements Candidate {
+
+ /**
+ * Generation for which the adapter was created for (necessary for calculating
+ * the candidate's age).
+ */
+ private int generation;
+
+ /**
+ * The candidate's phenotype.
+ */
+ private Phenotype<?, OptimisationValue> phenotype;
+
+ @Inject
+ private DynamicCodec codec;
+
+ public CandidateAdapter init(final Phenotype<?, OptimisationValue> phenotype, final int generation) {
+ this.phenotype = phenotype;
+ this.generation = generation;
+
+ return this;
+ }
+
+ /**
+ * {@inheritDoc}
+ */
+ @Override
+ public Properties searchSpaceRepresentation() {
+ return (Properties) codec.decoder().apply(phenotype.genotype());
+ }
+
+ /**
+ * {@inheritDoc}
+ */
+ @Override
+ public int age() {
+ return (int) phenotype.age(generation);
+ }
+
+ /**
+ * {@inheritDoc}
+ */
+ @Override
+ public OptimisationValue value() {
+ return phenotype.fitness();
+ }
+}
diff --git a/src/core/de.evoal.core.ea/src/main/java/de/evoal/core/ea/main/statistics/IterationResultAdapter.java b/src/core/de.evoal.core.ea/src/main/java/de/evoal/core/ea/main/statistics/IterationResultAdapter.java
new file mode 100644
index 00000000..76f9b86f
--- /dev/null
+++ b/src/core/de.evoal.core.ea/src/main/java/de/evoal/core/ea/main/statistics/IterationResultAdapter.java
@@ -0,0 +1,48 @@
+package de.evoal.core.ea.main.statistics;
+
+import de.evoal.core.api.cdi.BeanFactory;
+import de.evoal.core.api.optimisation.OptimisationValue;
+import de.evoal.core.api.statistics.Candidate;
+import de.evoal.core.api.statistics.IterationResult;
+import io.jenetics.Phenotype;
+import io.jenetics.engine.EvolutionResult;
+
+import java.util.Optional;
+import java.util.stream.Stream;
+
+/**
+ * An adapter, c.f. GOF: adapter pattern, for adapting Jenetic's {@link EvolutionResult} to
+ * EvoAl's {@link IterationResult}.
+ */
+public class IterationResultAdapter implements IterationResult {
+
+ private final EvolutionResult<?, OptimisationValue> statistics;
+
+ public IterationResultAdapter(final EvolutionResult<?, OptimisationValue> statistics) {
+ this.statistics = statistics;
+ }
+
+ @Override
+ public int iteration() {
+ return (int)statistics.generation();
+ }
+
+ @Override
+ public Stream<Candidate> candidates() {
+ return statistics.population()
+ .stream()
+ .map(p -> BeanFactory.create(CandidateAdapter.class).init(p, (int)statistics.generation()))
+ .map(Candidate.class::cast);
+ }
+
+ @Override
+ public Optional<Integer> candidateCount() {
+ return Optional.empty();
+ }
+
+ @Override
+ public Candidate bestCandidate() {
+ return BeanFactory.create(CandidateAdapter.class)
+ .init(statistics.bestPhenotype(), (int)statistics.generation());
+ }
+}
diff --git a/src/core/de.evoal.core.ea/src/main/java/de/evoal/core/ea/main/statistics/JeneticsStatisticsWriter.java b/src/core/de.evoal.core.ea/src/main/java/de/evoal/core/ea/main/statistics/JeneticsStatisticsWriter.java
new file mode 100644
index 00000000..c2d33ee0
--- /dev/null
+++ b/src/core/de.evoal.core.ea/src/main/java/de/evoal/core/ea/main/statistics/JeneticsStatisticsWriter.java
@@ -0,0 +1,21 @@
+package de.evoal.core.ea.main.statistics;
+
+import de.evoal.core.api.optimisation.OptimisationValue;
+import de.evoal.core.api.statistics.writer.StatisticsWriter;
+import io.jenetics.engine.EvolutionResult;
+
+/**
+ * Adapter for converting Jenetis statistics information into EvoAl
+ * statistics information.
+ */
+public class JeneticsStatisticsWriter {
+ private final StatisticsWriter writer;
+
+ public JeneticsStatisticsWriter(final StatisticsWriter writer) {
+ this.writer = writer;
+ }
+
+ public void add(final EvolutionResult<?, OptimisationValue> result) {
+ writer.add(new IterationResultAdapter(result));
+ }
+}
diff --git a/src/core/de.evoal.core.ea/src/main/java/module-info.java b/src/core/de.evoal.core.ea/src/main/java/module-info.java
new file mode 100644
index 00000000..a3984f71
--- /dev/null
+++ b/src/core/de.evoal.core.ea/src/main/java/module-info.java
@@ -0,0 +1,49 @@
+module de.evoal.core.ea {
+ exports de.evoal.core.ea.api.codec;
+ exports de.evoal.core.ea.api.initial;
+ exports de.evoal.core.ea.api.constraints.strategies;
+ exports de.evoal.core.ea.api.correlations;
+ exports de.evoal.core.ea.api.constraints.calculation;
+ exports de.evoal.core.ea.api.constraints.model;
+ requires jakarta.enterprise.cdi.api;
+ requires jakarta.inject.api;
+
+ requires lombok;
+
+ requires org.slf4j;
+
+ requires commons.math3;
+ requires io.jenetics.ext;
+
+ requires org.eclipse.emf.common;
+
+ requires de.evoal.languages.model.ddl;
+ requires de.evoal.languages.model.el;
+ requires de.evoal.languages.model.instance;
+
+ requires de.evoal.core.main;
+ requires java.annotation;
+ requires decimal4j;
+ requires de.evoal.languages.model.ol;
+
+ opens de.evoal.core.ea.api.correlations to weld.core.impl;
+ opens de.evoal.core.ea.api.constraints.model to weld.core.impl;
+ opens de.evoal.core.ea.api.constraints.calculation to weld.core.impl;
+
+ opens de.evoal.core.ea.main.alterer to weld.core.impl;
+ opens de.evoal.core.ea.main.alterer.mutator to weld.core.impl;
+ opens de.evoal.core.ea.main.codec to weld.core.impl;
+ opens de.evoal.core.ea.main.codec.chromosome to weld.core.impl;
+ opens de.evoal.core.ea.main.comparator to weld.core.impl;
+ opens de.evoal.core.ea.main.constraints.constraint to weld.core.impl;
+ opens de.evoal.core.ea.main.constraints.constraint.strategies.constraint to weld.core.impl;
+ opens de.evoal.core.ea.main.constraints.constraint.strategies.calculations to weld.core.impl;
+ opens de.evoal.core.ea.main.constraints.constraint.strategies.fitness to weld.core.impl;
+ opens de.evoal.core.ea.main.constraints.correlation to weld.core.impl;
+ opens de.evoal.core.ea.main.constraints.deviation to weld.core.impl;
+ opens de.evoal.core.ea.main.fitness to weld.core.impl;
+ opens de.evoal.core.ea.main.initial to weld.core.impl;
+ opens de.evoal.core.ea.main.producer to weld.core.impl;
+ opens de.evoal.core.ea.main.search to weld.core.impl;
+ opens de.evoal.core.ea.main.statistics to weld.core.impl;
+}
diff --git a/src/core/de.evoal.core.ea/src/main/resources/META-INF/MANIFEST.MF b/src/core/de.evoal.core.ea/src/main/resources/META-INF/MANIFEST.MF
new file mode 100644
index 00000000..9d885be5
--- /dev/null
+++ b/src/core/de.evoal.core.ea/src/main/resources/META-INF/MANIFEST.MF
@@ -0,0 +1 @@
+Manifest-Version: 1.0
diff --git a/src/core/de.evoal.core.ea/src/main/resources/META-INF/beans.xml b/src/core/de.evoal.core.ea/src/main/resources/META-INF/beans.xml
new file mode 100644
index 00000000..36964de4
--- /dev/null
+++ b/src/core/de.evoal.core.ea/src/main/resources/META-INF/beans.xml
@@ -0,0 +1,11 @@
+<beans xmlns="http://xmlns.jcp.org/xml/ns/javaee"
+ xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
+ xsi:schemaLocation="http://xmlns.jcp.org/xml/ns/javaee http://xmlns.jcp.org/xml/ns/javaee/beans_2_0.xsd"
+ bean-discovery-mode="annotated"
+ version="2.0">
+ <scan>
+ <exclude name="org.apache.deltaspike.core.impl.throttling.ThrottledInterceptor" />
+ <exclude name="org.apache.deltaspike.core.impl.scope.window.DefaultWindowContextQuotaHandler" />
+ <exclude name="org.apache.deltaspike.core.impl.scope.window.WindowBeanHolder" />
+ </scan>
+</beans>
\ No newline at end of file
diff --git a/src/core/de.evoal.core.ea/src/main/resources/META-INF/definitions/data/constraints.dl b/src/core/de.evoal.core.ea/src/main/resources/META-INF/definitions/data/constraints.dl
new file mode 100644
index 00000000..1ba8690e
--- /dev/null
+++ b/src/core/de.evoal.core.ea/src/main/resources/META-INF/definitions/data/constraints.dl
@@ -0,0 +1,13 @@
+/**
+ * Sets the variance of some data.
+ *
+ * <b>Parameters:</b>
+ * <ol>
+ * <li>Reference to the data ...</li>
+ * </ol>
+ */
+def void variance(data reference, float variance);
+
+def void connection(data ref1, data ref2, float connection);
+
+def void constraint(expression exp, string category);
diff --git a/src/core/de.evoal.core.ea/src/main/resources/META-INF/definitions/data/si-units.ddl b/src/core/de.evoal.core.ea/src/main/resources/META-INF/definitions/data/si-units.ddl
new file mode 100644
index 00000000..b7e8f297
--- /dev/null
+++ b/src/core/de.evoal.core.ea/src/main/resources/META-INF/definitions/data/si-units.ddl
@@ -0,0 +1,67 @@
+types:
+ cardinal type Newton description : "SI-Unit for force, measure in Newton[N=kg*m/s*s]."
+ with constraints:
+ value >= 0.0;
+ ;
+
+ quotient type Meter description: "SI-Unit for lengths, measured in metres[m]."
+ with constraints:
+ value >= 0.0;
+ ;
+
+ quotient type Second description: "SI-Unit for time, measured in seconds[s]."
+ with constraints:
+ value >= 0.0;
+ ;
+
+ quotient type Kilogram description: "SI-Unit for mass, measured in kilogram[kg]."
+ with constraints:
+ value >= 0.0;
+ ;
+
+ quotient type Ampere description: "SI-Unit for eletric current, measured in ampere[A]."
+ with constraints:
+ value >= 0.0;
+ ;
+
+ quotient type Kelvin description: "SI-Unit for thermodynamic temperature, measured in kelvin[K]."
+ with constraints:
+ value >= 0.0;
+ ;
+
+ quotient type Mole description: "SI-Unit for amount of substance, measure in mole[mol]."
+ with constraints:
+ value >= 0.0;
+ ;
+
+ quotient type Candela description: "SI-Unit for luminous intensity, measured in candela[cd]."
+ with constraints:
+ value >= 0.0;
+ ;
+
+ quotient type Hertz description: "SI-Unit for frequency, measured in hertz[Hz=1/s]."
+ with constraints:
+ value >= 0.0;
+ ;
+
+ quotient type Speed description: "SI-Unit for frequency, measured in metre per second[m/s]."
+ with constraints:
+ value >= 0.0;
+ ;
+
+ quotient type Pascal description: "SI-Unit for pressure, measure in Pascal[Pa=kg/m*s*s]."
+ with constraints:
+ value >= 0.0;
+ ;
+
+ cardinal type Celsius description: "SI-Unit for temperature relative to 273.15 K, measured in Celsius[°C=K]"
+ with constraints:
+ value >= -273.15;
+ ;
+
+ quotient type Area description: "SI-Unit for areas, measured in square meter[m*m]"
+ with constraints:
+ value >= 0.0;
+ ;
+
+
\ No newline at end of file
diff --git a/src/core/de.evoal.core.ea/src/main/resources/META-INF/definitions/optimisation/core.dl b/src/core/de.evoal.core.ea/src/main/resources/META-INF/definitions/optimisation/core.dl
new file mode 100644
index 00000000..91189620
--- /dev/null
+++ b/src/core/de.evoal.core.ea/src/main/resources/META-INF/definitions/optimisation/core.dl
@@ -0,0 +1,434 @@
+/**
+ * Root element for an evolutionary algorithm configuration.
+ */
+type configuration {
+ /**
+ * A freely selectable name for the configuration.
+ */
+ name : string;
+
+ /**
+ * The algorithm configuration.
+ */
+ algorithm : instance algorithm;
+
+ /**
+ * Configuration of statistics to measure and to write.
+ */
+ statistics : instance statistics;
+}
+
+abstract type algorithm {}
+
+type 'evolutionary-algorithm' extends 'algorithm' {
+ 'number-of-generations' : int;
+ 'size-of-population' : int;
+ 'maximum-age' : int;
+ maximize : boolean;
+
+ genotype : array instance chromosome;
+
+ initialization : instance 'initial-population';
+ handlers : array instance 'handler';
+ selectors : instance selectors;
+ alterers : instance alterers;
+
+ fitness : instance 'fitness-function';
+ comparator : instance comparator;
+}
+
+abstract type chromosome {
+ genes : array instance gene;
+}
+
+type 'bit-chromosome' extends chromosome {
+ scale : int;
+}
+
+type 'gray-chromosome' extends 'bit-chromosome' {
+ scale : int;
+}
+
+type 'double-chromosome' extends chromosome {
+}
+
+type 'integer-chromosome' extends chromosome {
+}
+
+type gene { content : data; }
+
+abstract type comparator {}
+
+type 'weighted-sum' extends comparator {
+ weights : array float;
+}
+
+type pareto extends comparator {
+}
+
+/**
+ * Abstract base class for functions to map the individual to the target values.
+ */
+abstract type 'fitness-function' {}
+
+/**
+ * Abstract base class for all fitness functions that call a subsequent fitness function during calculation.
+ */
+abstract type 'decorated-fitness-function' extends 'fitness-function' {
+ /**
+ * Fitness function we are calling during the fitness calculation.
+ */
+ function : instance 'fitness-function';
+}
+
+type 'malus' extends 'decorated-fitness-function' {
+}
+
+/**
+ * Fitness function that calculates the difference between a fitness value and a
+ * target value to optimize to:<br/>
+ *
+ * <mathml>
+ * <math>
+ * <mrow>
+ * <mi>f</mi>
+ * <mi>i</mi>
+ * <mi>t</mi>
+ * <mi>n</mi>
+ * <mi>e</mi>
+ * <mi>s</mi>
+ * <mi>s</mi>
+ * <mo>=</mo>
+ * <mi>f</mi>
+ * <mi>u</mi>
+ * <mi>n</mi>
+ * <mi>c</mi>
+ * <mi>t</mi>
+ * <mi>i</mi>
+ * <mi>o</mi>
+ * <mi>n</mi>
+ * <mo form="prefix" stretchy="false">(</mo>
+ * <mi>i</mi>
+ * <mi>n</mi>
+ * <mi>d</mi>
+ * <mo form="postfix" stretchy="false">)</mo>
+ * <mo>−</mo>
+ * <mi>t</mi>
+ * <mi>a</mi>
+ * <mi>r</mi>
+ * <mi>g</mi>
+ * <mi>e</mi>
+ * <mi>t</mi>
+ * </mrow>
+ * </math>
+ * </mathml>
+ */
+type distance extends 'decorated-fitness-function' {
+ target : array instance variable;
+}
+
+type variable {
+ name : data;
+ val : literal;
+}
+
+abstract type 'goal-function' extends 'fitness-function' {
+ 'maps-to' : array data;
+}
+
+/**
+ * Calculating fitness value by using a surrogate function:<br/>
+ *
+ * <mathml>
+ * <math>
+ * <mrow>
+ * <mi>f</mi>
+ * <mi>i</mi>
+ * <mi>t</mi>
+ * <mi>n</mi>
+ * <mi>e</mi>
+ * <mi>s</mi>
+ * <mi>s</mi>
+ * <mo>=</mo>
+ * <mi>s</mi>
+ * <mi>u</mi>
+ * <mi>r</mi>
+ * <mi>r</mi>
+ * <mi>o</mi>
+ * <mi>g</mi>
+ * <mi>a</mi>
+ * <mi>t</mi>
+ * <mi>e</mi>
+ * <mo form="prefix" stretchy="false">(</mo>
+ * <mi>i</mi>
+ * <mi>n</mi>
+ * <mi>d</mi>
+ * <mo form="postfix" stretchy="false">)</mo>
+ * </mrow>
+ * </math>
+ * </mathml>
+ */
+type surrogate extends 'goal-function' {
+}
+
+/**
+ * Calculating fitness value by using a known function:<br/>
+ *
+ * <mathml>
+ * <math>
+ * <mrow>
+ * <mi>f</mi>
+ * <mi>i</mi>
+ * <mi>t</mi>
+ * <mi>n</mi>
+ * <mi>e</mi>
+ * <mi>s</mi>
+ * <mi>s</mi>
+ * <mo>=</mo>
+ * <mi>n</mi>
+ * <mi>o</mi>
+ * <mi>r</mi>
+ * <mi>m</mi>
+ * <mi>a</mi>
+ * <mi>l</mi>
+ * <mo form="prefix" stretchy="false">(</mo>
+ * <mi>i</mi>
+ * <mi>n</mi>
+ * <mi>d</mi>
+ * <mo form="postfix" stretchy="false">)</mo>
+ * </mrow>
+ * </math>
+ * </mathml>
+ */
+type normal extends 'fitness-function' {
+}
+
+abstract type 'initial-population' {}
+
+type 'random-population' extends 'initial-population' {
+}
+
+abstract type handler {}
+
+type 'constraint-handler' extends handler {
+ category : string;
+ calculation : instance normal | 'standard-deviation';
+ 'constraint-handling' : instance 'kill-at-birth' | 'malus-for-fitness';
+}
+
+type 'standard-deviation' {
+ factor : float;
+}
+
+type 'kill-at-birth' {
+ 'repair-strategy' : instance 'repair-strategy';
+}
+
+abstract type 'repair-strategy' {}
+
+type 'repair-with-random' extends 'repair-strategy' {}
+
+type 'malus-for-fitness' {
+ smoothing : float;
+}
+
+type selectors {
+ survivor : instance selector;
+ offspring : instance selector;
+}
+
+abstract type selector {
+}
+
+type 'elite-selector' extends selector {
+ 'size-factor' : float;
+ 'non-elite-selector' : instance selector;
+}
+
+type 'boltzmann-selector' extends selector {
+ beta : float;
+}
+
+type 'exponential-rank-selector' extends selector {
+}
+
+type 'linear-rank-selector' extends selector {
+ nminus : int;
+}
+
+type 'monte-carlo-selector' extends selector {
+}
+
+type 'probability-selector' extends selector {
+}
+
+type 'stochastic-universal-selector' extends selector {
+}
+
+type 'tournament-selector' extends selector {
+ 'size-factor' : float;
+}
+
+type 'truncation-selector' extends selector {
+ 'worst-rank' : int;
+}
+
+type alterers {
+ crossover : array instance crossover;
+ mutator : array instance mutator ;
+}
+
+abstract type crossover {}
+
+type 'mean-alterer' extends crossover {
+ probability : float;
+}
+
+type 'correlation-mean-alterer' extends crossover {
+ probability : float;
+}
+
+type 'partial-matched-alterer' extends crossover {
+ probability : float;
+}
+
+type 'correlation-partial-matched-alterer' extends crossover {
+ probability : float;
+}
+
+type 'line-crossover' extends crossover {
+ probability : float;
+ position : float;
+}
+
+type 'correlation-line-crossover' extends crossover {
+ probability : float;
+ position : float;
+}
+
+type 'multi-point-crossover' extends crossover {
+ probability : float;
+ count : int;
+}
+
+type 'correlation-multi-point-crossover' extends crossover {
+ probability : float;
+ count : int;
+}
+
+type 'single-point-crossover' extends crossover {
+ probability : float;
+}
+
+type 'correlation-single-point-crossover' extends crossover {
+ probability : float;
+}
+
+type 'uniform-crossover' extends crossover {
+ 'crossover-probability' : float;
+ 'swap-probability' : float;
+}
+
+type 'correlation-uniform-crossover' extends crossover {
+ 'crossover-probability' : float;
+ 'swap-probability' : float;
+}
+
+abstract type mutator {
+}
+
+type 'gaussian-mutator' extends mutator {
+ probability : float;
+}
+
+type 'correlation-gaussian-mutator' extends mutator {
+ probability : float;
+ threshold : float;
+}
+
+type 'swap-mutator' extends mutator {
+ probability : float;
+}
+
+type 'correlation-swap-mutator' extends mutator {
+ probability : float;
+ threshold : float;
+}
+
+type 'bit-flip-mutator' extends mutator {
+ probability : float;
+}
+
+type 'correlation-bit-flip-mutator' extends mutator {
+ probability : float;
+ threshold : float;
+}
+
+type statistics {
+ writer : array instance 'statistics-writer';
+}
+
+abstract type 'statistics-writer' {
+}
+
+/**
+ * Creates a file named '<tt>constraint-statistics.csv</tt>' containing
+ * information on each generation and constraint violations:
+ *
+ * <ul>
+ * <li>generation</li>
+ * <li>for each constraint:
+ * <ul>
+ * <li>number of violating individuals</li>
+ * <li>sum of differences</li>
+ * <li>min of differences</li>
+ * <li>avg of differences</li>
+ * <li>max of differences</li>
+ * </ul>
+ * </li>
+ * </ul>
+ */
+type 'constraint-statistics' extends 'statistics-writer' {}
+
+/**
+ * Creates a file named '<tt>fitness-by-individual.csv</tt>' containing for each individual
+ * of each generation the following information:
+ *
+ * <ul>
+ * <li>generation</li>
+ * <li>index of individual</li>
+ * <li>fitness value of each predicted value of the individual</li>
+ * </ul>
+ */
+type 'fitness-per-individual' extends 'statistics-writer' {}
+
+/**
+ * Creates a file named '<tt>individuals.csv</tt>' containing for each individual
+ * the following information:
+ *
+ * <ul>
+ * <li>generation</li>
+ * <li>index of individual</li>
+ * <li>text representation of individual</li>
+ * <li>age</li>
+ * <li>each property value of the individual</li>
+ * </ul>
+ */
+type individuals extends 'statistics-writer' {}
+
+/**
+ * Does not write any statistics. Can be used to disable statistics output.
+ */
+type none extends 'statistics-writer' {}
+
+/**
+ * Creates a file named '<tt>prediction-by-individual.csv</tt>' containing the
+ * predicted value(s) of each individual for each generation of the EA run:
+ *
+ * <ul>
+ * <li>generation</li>
+ * <li>index of individual</li>
+ * <li>each predicted value of the individual</li>
+ * </ul>
+ */
+type 'prediction-per-individual' extends 'statistics-writer' {}
diff --git a/src/core/de.evoal.core.ea/src/test/resources/de/evoal/core/ea/utils/LanguageHelperTest.dl b/src/core/de.evoal.core.ea/src/test/resources/de/evoal/core/ea/utils/LanguageHelperTest.dl
new file mode 100644
index 00000000..bde38ea5
--- /dev/null
+++ b/src/core/de.evoal.core.ea/src/test/resources/de/evoal/core/ea/utils/LanguageHelperTest.dl
@@ -0,0 +1,12 @@
+type 'parent' {
+ child : instance A;
+}
+
+type A {
+ 'float-field' : float;
+ 'string-field' : string;
+ 'integer-field' : int;
+ 'boolean-field' : boolean;
+ 'array-1D-float' : array float;
+ 'array-2D-int' : array array int;
+}
\ No newline at end of file
diff --git a/src/core/de.evoal.core.ea/src/test/resources/de/evoal/core/ea/utils/LanguageHelperTest.ol b/src/core/de.evoal.core.ea/src/test/resources/de/evoal/core/ea/utils/LanguageHelperTest.ol
new file mode 100644
index 00000000..59094313
--- /dev/null
+++ b/src/core/de.evoal.core.ea/src/test/resources/de/evoal/core/ea/utils/LanguageHelperTest.ol
@@ -0,0 +1,16 @@
+use "LanguageHelperTest.dl";
+
+parent {
+ child := A {
+ 'boolean-field' := true;
+ 'float-field' := 1.3;
+ 'integer-field' := 4;
+ 'string-field' := "FOOBAR";
+ 'array-1D-float' := [4.2, 3.1, 1.0];
+ 'array-2D-int' := [
+ [ 1, 2, 3, 4, 5],
+ [ 3, 2, 1],
+ [42]
+ ];
+ };
+}
\ No newline at end of file
diff --git a/src/core/de.evoal.core.ea/src/test/resources/de/evoal/core/ea/utils/regressions/generator.dl b/src/core/de.evoal.core.ea/src/test/resources/de/evoal/core/ea/utils/regressions/generator.dl
new file mode 100644
index 00000000..84b046e8
--- /dev/null
+++ b/src/core/de.evoal.core.ea/src/test/resources/de/evoal/core/ea/utils/regressions/generator.dl
@@ -0,0 +1,25 @@
+/**
+ * Shekel's foxholes.
+ *
+ * https://www.sfu.ca/~ssurjano/shekel.html
+ */
+type 'shekel' {
+ /**
+ * The recommended value for the vector a is (1/m)*{1,2,2,4,4,6,3,7,5,5}.
+ */
+ 'a' : array float;
+
+ /**
+ * The recommended value for the constant c is {
+ * {4.0, 1.0, 8.0, 6.0, 3.0, 2.0, 5.0, 8.0, 6.0, 7.0},
+ * {4.0, 1.0, 8.0, 6.0, 7.0, 9.0, 3.0, 1.0, 2.0, 3.6},
+ * {4.0, 1.0, 8.0, 6.0, 3.0, 2.0, 5.0, 8.0, 6.0, 7.0},
+ * {4.0, 1.0, 8.0, 6.0, 7.0, 9.0, 3.0, 1.0, 2.0, 3.6}}.
+ */
+ 'c' : array array float;
+
+ /**
+ * The recommended value for the constant m is 10.
+ */
+ 'm' : float;
+}
diff --git a/src/core/de.evoal.core.ea/src/test/resources/de/evoal/core/ea/utils/regressions/shekel.generator b/src/core/de.evoal.core.ea/src/test/resources/de/evoal/core/ea/utils/regressions/shekel.generator
new file mode 100644
index 00000000..7486510a
--- /dev/null
+++ b/src/core/de.evoal.core.ea/src/test/resources/de/evoal/core/ea/utils/regressions/shekel.generator
@@ -0,0 +1,20 @@
+use "generator.dl";
+use "test.ddl";
+
+pipeline example [
+ step {
+ component 'shekel' {
+ 'a' := [1.0,2.0,2.0,4.0,4.0,6.0,3.0,7.0,5.0,5.0];
+ 'c' := [
+ [4.0,1.0,8.0,6.0,3.0,2.0,5.0,8.0,6.0,7.0],
+ [4.0,1.0,8.0,6.0,7.0,9.0,3.0,1.0,2.0,3.6],
+ [4.0,1.0,8.0,6.0,3.0,2.0,5.0,8.0,6.0,7.0],
+ [4.0,1.0,8.0,6.0,7.0,9.0,3.0,1.0,2.0,3.6]
+ ];
+ 'm' := 10.0;
+ }
+
+ reads [data 'x:0'];
+ writes [data 'x:1'];
+ }
+]
diff --git a/src/core/de.evoal.core.ea/src/test/resources/de/evoal/core/ea/utils/regressions/test.ddl b/src/core/de.evoal.core.ea/src/test/resources/de/evoal/core/ea/utils/regressions/test.ddl
new file mode 100644
index 00000000..0a100d63
--- /dev/null
+++ b/src/core/de.evoal.core.ea/src/test/resources/de/evoal/core/ea/utils/regressions/test.ddl
@@ -0,0 +1,3 @@
+data:
+ quotient real data 'x:0';
+ quotient real data 'x:1';
\ No newline at end of file
diff --git a/src/core/de.evoal.core.junit/pom.xml b/src/core/de.evoal.core.junit/pom.xml
index 18a5e744..c2754b4c 100644
--- a/src/core/de.evoal.core.junit/pom.xml
+++ b/src/core/de.evoal.core.junit/pom.xml
@@ -7,6 +7,7 @@
<groupId>de.evoal</groupId>
<artifactId>releng.parent</artifactId>
<version>0.9.0-SNAPSHOT</version>
+ <relativePath>../de.evoal.releng.parent</relativePath>
</parent>
<artifactId>core.junit</artifactId>
diff --git a/src/core/de.evoal.core.junit/src/main/java/de/evoal/core/junit/dsl/NoOpBuiltinProvider.java b/src/core/de.evoal.core.junit/src/main/java/de/evoal/core/junit/dsl/NoOpBuiltinProvider.java
new file mode 100644
index 00000000..76261191
--- /dev/null
+++ b/src/core/de.evoal.core.junit/src/main/java/de/evoal/core/junit/dsl/NoOpBuiltinProvider.java
@@ -0,0 +1,14 @@
+package de.evoal.core.junit.dsl;
+
+import de.evoal.languages.model.utils.builtin.BuiltinProvider;
+
+import java.net.URI;
+import java.util.Collection;
+import java.util.Collections;
+
+public class NoOpBuiltinProvider implements BuiltinProvider {
+ @Override
+ public Collection<URI> findBuiltins(String s) {
+ return Collections.emptyList();
+ }
+}
diff --git a/src/core/de.evoal.core.junit/src/main/java/module-info.java b/src/core/de.evoal.core.junit/src/main/java/module-info.java
index ca0735dc..8f2e8717 100644
--- a/src/core/de.evoal.core.junit/src/main/java/module-info.java
+++ b/src/core/de.evoal.core.junit/src/main/java/module-info.java
@@ -22,7 +22,10 @@ module de.evoal.core.junit {
requires de.evoal.languages.model.generator.dsl;
requires de.evoal.languages.model.mll.dsl;
requires de.evoal.languages.model.ol.dsl;
+ requires de.evoal.languages.model.utils;
exports de.evoal.core.junit.dsl;
exports de.evoal.core.junit.resources;
+
+ provides de.evoal.languages.model.utils.builtin.BuiltinProvider with de.evoal.core.junit.dsl.NoOpBuiltinProvider;
}
\ No newline at end of file
diff --git a/src/core/de.evoal.core.main/pom.xml b/src/core/de.evoal.core.main/pom.xml
index 38fb5e77..b0ed4fc7 100644
--- a/src/core/de.evoal.core.main/pom.xml
+++ b/src/core/de.evoal.core.main/pom.xml
@@ -250,21 +250,6 @@
<scope>compile</scope>
</dependency>
- <dependency>
- <groupId>io.jenetics</groupId>
- <artifactId>jenetics.ext</artifactId>
- <version>${jenetics.version}</version>
- <scope>compile</scope>
- </dependency>
-
- <dependency>
- <groupId>org.decimal4j</groupId>
- <artifactId>decimal4j</artifactId>
- <version>1.0.3</version>
- <scope>compile</scope>
- </dependency>
-
-
<!-- Math stuff -->
<dependency>
<groupId>org.apache.commons</groupId>
@@ -273,13 +258,6 @@
<scope>compile</scope>
</dependency>
- <dependency>
- <groupId>com.github.haifengl</groupId>
- <artifactId>smile-math</artifactId>
- <version>${smile.version}</version>
- <scope>compile</scope>
- </dependency>
-
<dependency>
<groupId>org.junit.jupiter</groupId>
<artifactId>junit-jupiter</artifactId>
@@ -317,27 +295,6 @@
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-compiler-plugin</artifactId>
- <version>3.10.1</version>
- <configuration>
- <annotationProcessorPaths>
- <path>
- <groupId>org.projectlombok</groupId>
- <artifactId>lombok</artifactId>
- <version>${lombok.version}</version>
- </path>
- </annotationProcessorPaths>
- <compilerArgs>
- <arg>--add-exports</arg>
- <arg>io.jenetics.base/io.jenetics.internal.math=de.evoal.core.main</arg>
- <arg>--add-exports</arg>
- <arg>io.jenetics.base/io.jenetics.internal.util=de.evoal.core.main</arg>
- <arg>--add-exports</arg>
- <arg>io.jenetics.base/io.jenetics.internal.collection=de.evoal.core.main</arg>
- <!--<arg>- -add-exports</arg>
- <arg>org.eclipse.xtext.util/org.eclipse.xtext.util=de.evoal.core.main</arg>-->
- </compilerArgs>
- <forceJavacCompilerUse>true</forceJavacCompilerUse>
- </configuration>
</plugin>
</plugins>
</build>
diff --git a/src/core/de.evoal.core.main/scripts/paths.env b/src/core/de.evoal.core.main/scripts/paths.env
index b627c074..afa56377 100644
--- a/src/core/de.evoal.core.main/scripts/paths.env
+++ b/src/core/de.evoal.core.main/scripts/paths.env
@@ -4,7 +4,7 @@ PLUGIN_PATHS=`ls -d "${EVOALPATH}/plugins"/* | tr '\n' ':'`
CLASSPATH="-Dorg.jboss.logging.provider=slf4j \
--module-path ${EVOALPATH}/modules/:$PLUGIN_PATHS \
--add-modules ALL-MODULE-PATH \
- --add-exports io.jenetics.base/io.jenetics.internal.math=de.evoal.core.main \
- --add-exports io.jenetics.base/io.jenetics.internal.collection=de.evoal.core.main \
- --add-exports io.jenetics.base/io.jenetics.internal.util=de.evoal.core.main \
+ --add-exports io.jenetics.base/io.jenetics.internal.math=de.evoal.core.ea \
+ --add-exports io.jenetics.base/io.jenetics.internal.collection=de.evoal.core.ea \
+ --add-exports io.jenetics.base/io.jenetics.internal.util=de.evoal.core.ea \
-m de.evoal.core.main/de.evoal.core.main.Evoal"
\ No newline at end of file
diff --git a/src/core/de.evoal.core.main/src/main/java/de/evoal/core/api/ea/fitness/FitnessDecorator.java b/src/core/de.evoal.core.main/src/main/java/de/evoal/core/api/ea/fitness/FitnessDecorator.java
deleted file mode 100644
index fea17387..00000000
--- a/src/core/de.evoal.core.main/src/main/java/de/evoal/core/api/ea/fitness/FitnessDecorator.java
+++ /dev/null
@@ -1,19 +0,0 @@
-package de.evoal.core.api.ea.fitness;
-
-import de.evoal.core.api.cdi.BeanFactory;
-import de.evoal.core.api.ea.fitness.FitnessFunction;
-import de.evoal.languages.model.instance.Instance;
-
-public abstract class FitnessDecorator implements FitnessFunction {
- protected FitnessFunction decoratedFunction;
-
- @Override
- public FitnessFunction init(final Instance config) {
- final Instance decoratedConfig = (Instance) config.findAttribute("function").getValue();
-
- decoratedFunction = BeanFactory.create(decoratedConfig.getDefinition().getName(), FitnessFunction.class);
- decoratedFunction.init(decoratedConfig);
-
- return this;
- }
-}
diff --git a/src/core/de.evoal.core.main/src/main/java/de/evoal/core/api/ea/fitness/FitnessFunction.java b/src/core/de.evoal.core.main/src/main/java/de/evoal/core/api/ea/fitness/FitnessFunction.java
deleted file mode 100644
index fc82aebf..00000000
--- a/src/core/de.evoal.core.main/src/main/java/de/evoal/core/api/ea/fitness/FitnessFunction.java
+++ /dev/null
@@ -1,21 +0,0 @@
-package de.evoal.core.api.ea.fitness;
-
-import de.evoal.core.api.properties.Properties;
-import de.evoal.core.api.properties.PropertiesSpecification;
-import de.evoal.languages.model.instance.Instance;
-
-import java.util.function.Function;
-
-/**
- * A fitness function calculates a list of doubles for a given individual,
- * expressing some kind of similarity measures.
- */
-public interface FitnessFunction extends Function<Properties, double []> {
- public default double [] apply(final Properties properties) {
- return evaluate(properties);
- }
-
- public double [] evaluate(final Properties properties);
-
- FitnessFunction init(final Instance config);
-}
diff --git a/src/core/de.evoal.core.main/src/main/java/de/evoal/core/api/ea/fitness/comparator/FitnessComparator.java b/src/core/de.evoal.core.main/src/main/java/de/evoal/core/api/ea/fitness/comparator/FitnessComparator.java
deleted file mode 100644
index ae502fa9..00000000
--- a/src/core/de.evoal.core.main/src/main/java/de/evoal/core/api/ea/fitness/comparator/FitnessComparator.java
+++ /dev/null
@@ -1,25 +0,0 @@
-package de.evoal.core.api.ea.fitness.comparator;
-
-import de.evoal.languages.model.instance.Instance;
-
-import java.util.function.Function;
-
-/**
- * Converts a given set of fitness values (result of {@link de.evoal.core.api.ea.fitness.FitnessFunction}
- * into a {@link FitnessValue} for Jenetics.
- */
-public interface FitnessComparator extends Function<double [], FitnessValue> {
- /**
- * Creates a fitness type instance for the given fitness values.
- *
- * @param fitnessValues The calculated fitness values to convert.
- * @return The calculated FitnessType.
- */
- public FitnessValue compare(final double [] fitnessValues);
-
- public default FitnessValue apply(final double [] fitnessValues) {
- return compare(fitnessValues);
- }
-
- FitnessComparator init(final Instance config);
-}
diff --git a/src/core/de.evoal.core.main/src/main/java/de/evoal/core/api/ea/fitness/comparator/FitnessValue.java b/src/core/de.evoal.core.main/src/main/java/de/evoal/core/api/ea/fitness/comparator/FitnessValue.java
deleted file mode 100644
index 6b0e79e2..00000000
--- a/src/core/de.evoal.core.main/src/main/java/de/evoal/core/api/ea/fitness/comparator/FitnessValue.java
+++ /dev/null
@@ -1,11 +0,0 @@
-package de.evoal.core.api.ea.fitness.comparator;
-
-/**
- * The fitness value is an abstract type that allows comparing them.
- */
-public interface FitnessValue extends Comparable<FitnessValue> {
- /**
- * @return A list of serializable information for fitness value statistics.
- */
- public Object [] toStatistics();
-}
diff --git a/src/core/de.evoal.core.main/src/main/java/de/evoal/core/api/ea/fitness/package-info.java b/src/core/de.evoal.core.main/src/main/java/de/evoal/core/api/ea/fitness/package-info.java
deleted file mode 100644
index 0a81b12d..00000000
--- a/src/core/de.evoal.core.main/src/main/java/de/evoal/core/api/ea/fitness/package-info.java
+++ /dev/null
@@ -1,4 +0,0 @@
-/**
- * API package for fitness calculators.
- */
-package de.evoal.core.api.ea.fitness;
\ No newline at end of file
diff --git a/src/core/de.evoal.core.main/src/main/java/de/evoal/core/api/search/OptimisationAlgorithm.java b/src/core/de.evoal.core.main/src/main/java/de/evoal/core/api/optimisation/OptimisationAlgorithm.java
similarity index 85%
rename from src/core/de.evoal.core.main/src/main/java/de/evoal/core/api/search/OptimisationAlgorithm.java
rename to src/core/de.evoal.core.main/src/main/java/de/evoal/core/api/optimisation/OptimisationAlgorithm.java
index eb738cc1..4d3701f6 100644
--- a/src/core/de.evoal.core.main/src/main/java/de/evoal/core/api/search/OptimisationAlgorithm.java
+++ b/src/core/de.evoal.core.main/src/main/java/de/evoal/core/api/optimisation/OptimisationAlgorithm.java
@@ -1,4 +1,4 @@
-package de.evoal.core.api.search;
+package de.evoal.core.api.optimisation;
import de.evoal.languages.model.instance.Instance;
@@ -11,7 +11,7 @@ public interface OptimisationAlgorithm {
*
* @param instance The configuration to use.
*
- * @return The algrithm itself.
+ * @return The algorithm itself.
*/
public OptimisationAlgorithm init(final Instance instance);
diff --git a/src/core/de.evoal.core.main/src/main/java/de/evoal/core/api/optimisation/OptimisationFunction.java b/src/core/de.evoal.core.main/src/main/java/de/evoal/core/api/optimisation/OptimisationFunction.java
new file mode 100644
index 00000000..c3407f6d
--- /dev/null
+++ b/src/core/de.evoal.core.main/src/main/java/de/evoal/core/api/optimisation/OptimisationFunction.java
@@ -0,0 +1,16 @@
+package de.evoal.core.api.optimisation;
+
+import de.evoal.core.api.properties.Properties;
+import de.evoal.languages.model.instance.Instance;
+
+import java.util.function.Function;
+
+public interface OptimisationFunction extends Function<Properties, double []> {
+ public default double [] apply(final Properties candidate) {
+ return apply(candidate);
+ }
+
+ public double [] evaluate(final Properties candidate);
+
+ public OptimisationFunction init(final Instance config);
+}
diff --git a/src/core/de.evoal.core.main/src/main/java/de/evoal/core/api/optimisation/OptimisationFunctionDecorator.java b/src/core/de.evoal.core.main/src/main/java/de/evoal/core/api/optimisation/OptimisationFunctionDecorator.java
new file mode 100644
index 00000000..25fa8e46
--- /dev/null
+++ b/src/core/de.evoal.core.main/src/main/java/de/evoal/core/api/optimisation/OptimisationFunctionDecorator.java
@@ -0,0 +1,19 @@
+package de.evoal.core.api.optimisation;
+
+import de.evoal.core.api.cdi.BeanFactory;
+import de.evoal.core.api.optimisation.OptimisationFunction;
+import de.evoal.languages.model.instance.Instance;
+
+public abstract class OptimisationFunctionDecorator implements OptimisationFunction {
+ protected OptimisationFunction decoratedFunction;
+
+ @Override
+ public OptimisationFunction init(final Instance config) {
+ final Instance decoratedConfig = (Instance) config.findAttribute("function").getValue();
+
+ decoratedFunction = BeanFactory.create(decoratedConfig.getDefinition().getName(), OptimisationFunction.class);
+ decoratedFunction.init(decoratedConfig);
+
+ return this;
+ }
+}
diff --git a/src/core/de.evoal.core.main/src/main/java/de/evoal/core/api/optimisation/OptimisationValue.java b/src/core/de.evoal.core.main/src/main/java/de/evoal/core/api/optimisation/OptimisationValue.java
new file mode 100644
index 00000000..3978c729
--- /dev/null
+++ b/src/core/de.evoal.core.main/src/main/java/de/evoal/core/api/optimisation/OptimisationValue.java
@@ -0,0 +1,11 @@
+package de.evoal.core.api.optimisation;
+
+/**
+ * The optimisation value is an abstract type that allows comparing them.
+ */
+public interface OptimisationValue extends Comparable<OptimisationValue> {
+ /**
+ * @return A list of serializable information for optimisation value statistics.
+ */
+ public Object [] toStatistics();
+}
diff --git a/src/core/de.evoal.core.main/src/main/java/de/evoal/core/api/optimisation/OptimisationValueComparator.java b/src/core/de.evoal.core.main/src/main/java/de/evoal/core/api/optimisation/OptimisationValueComparator.java
new file mode 100644
index 00000000..2bd4e34c
--- /dev/null
+++ b/src/core/de.evoal.core.main/src/main/java/de/evoal/core/api/optimisation/OptimisationValueComparator.java
@@ -0,0 +1,34 @@
+package de.evoal.core.api.optimisation;
+
+import de.evoal.languages.model.instance.Instance;
+
+import java.util.function.Function;
+
+/**
+ * Converts a given optimisation value (result of {@link de.evoal.core.api.optimisation.OptimisationFunction})
+ * into a {@link OptimisationValue} for comparison.
+ */
+public interface OptimisationValueComparator extends Function<double [], OptimisationValue> {
+
+ /**
+ * Applies the comparator to a given set of raw optimisation values.
+ *
+ * @param optimisationValues the raw values.
+ * @return the optimisation value for comparison.
+ */
+ public default OptimisationValue apply(final double [] optimisationValues) {
+ return toValue(optimisationValues);
+ }
+
+ /**
+ * Creates an optimisation value instance for raw fitness values.
+ *
+ * @param optimisationValues the raw values.
+ * @return The calculated optimisation value.
+ */
+ public OptimisationValue toValue(final double [] optimisationValues);
+
+
+
+ OptimisationValueComparator init(final Instance config);
+}
diff --git a/src/core/de.evoal.core.main/src/main/java/de/evoal/core/api/properties/PropertiesSpecification.java b/src/core/de.evoal.core.main/src/main/java/de/evoal/core/api/properties/PropertiesSpecification.java
index 55e5ffd6..c4d13c47 100644
--- a/src/core/de.evoal.core.main/src/main/java/de/evoal/core/api/properties/PropertiesSpecification.java
+++ b/src/core/de.evoal.core.main/src/main/java/de/evoal/core/api/properties/PropertiesSpecification.java
@@ -1,8 +1,6 @@
package de.evoal.core.api.properties;
import de.evoal.languages.model.ddl.DataDescription;
-import org.apache.commons.math3.util.Pair;
-import org.slf4j.LoggerFactory;
import java.util.*;
import java.util.stream.Collectors;
diff --git a/src/core/de.evoal.core.main/src/main/java/de/evoal/core/api/statistics/Candidate.java b/src/core/de.evoal.core.main/src/main/java/de/evoal/core/api/statistics/Candidate.java
new file mode 100644
index 00000000..3f8ae958
--- /dev/null
+++ b/src/core/de.evoal.core.main/src/main/java/de/evoal/core/api/statistics/Candidate.java
@@ -0,0 +1,30 @@
+package de.evoal.core.api.statistics;
+
+import de.evoal.core.api.optimisation.OptimisationValue;
+import de.evoal.core.api.properties.Properties;
+
+/**
+ * A solution candidate for the optimisation problem
+ */
+public interface Candidate {
+ /**
+ * Returns the age of the candidate that is always related to an optimisation
+ * iteration, c.f., {@link IterationResult}. If there is no age in the
+ * optimisation algorithm this value defaults to {@code 1}.
+ *
+ * @return The age of the candidate For iteration-based approaches.
+ */
+ public default int age() {
+ return 1;
+ }
+
+ /**
+ * @return The candidate's search space representation.
+ */
+ public Properties searchSpaceRepresentation();
+
+ /**
+ * @return The optimisation value of the candidate.
+ */
+ public OptimisationValue value();
+}
diff --git a/src/core/de.evoal.core.main/src/main/java/de/evoal/core/api/statistics/IterationResult.java b/src/core/de.evoal.core.main/src/main/java/de/evoal/core/api/statistics/IterationResult.java
new file mode 100644
index 00000000..b3acbecf
--- /dev/null
+++ b/src/core/de.evoal.core.main/src/main/java/de/evoal/core/api/statistics/IterationResult.java
@@ -0,0 +1,30 @@
+package de.evoal.core.api.statistics;
+
+import java.util.Optional;
+import java.util.stream.Stream;
+
+/**
+ * Result of a single iteration of an optimisation
+ */
+public interface IterationResult {
+ /**
+ * @return The current iteration number.
+ */
+ public int iteration();
+
+ /**
+ * @return Stream of all candidates of the iteration. May be empty.
+ */
+ public Stream<Candidate> candidates();
+
+ /**
+ * The number of candidates of this iteration if available.
+ */
+ public Optional<Integer> candidateCount();
+
+ /**
+ * @return The best candidate of the iteration.
+ */
+ public Candidate bestCandidate();
+
+}
diff --git a/src/core/de.evoal.core.main/src/main/java/de/evoal/core/api/statistics/Writer.java b/src/core/de.evoal.core.main/src/main/java/de/evoal/core/api/statistics/io/Writer.java
similarity index 92%
rename from src/core/de.evoal.core.main/src/main/java/de/evoal/core/api/statistics/Writer.java
rename to src/core/de.evoal.core.main/src/main/java/de/evoal/core/api/statistics/io/Writer.java
index 0a1c3189..ca527131 100644
--- a/src/core/de.evoal.core.main/src/main/java/de/evoal/core/api/statistics/Writer.java
+++ b/src/core/de.evoal.core.main/src/main/java/de/evoal/core/api/statistics/io/Writer.java
@@ -1,4 +1,4 @@
-package de.evoal.core.api.statistics;
+package de.evoal.core.api.statistics.io;
/**
* Base interface for all statistics writer.
diff --git a/src/core/de.evoal.core.main/src/main/java/de/evoal/core/api/statistics/WriterException.java b/src/core/de.evoal.core.main/src/main/java/de/evoal/core/api/statistics/io/WriterException.java
similarity index 83%
rename from src/core/de.evoal.core.main/src/main/java/de/evoal/core/api/statistics/WriterException.java
rename to src/core/de.evoal.core.main/src/main/java/de/evoal/core/api/statistics/io/WriterException.java
index 62f74d95..12f6a903 100644
--- a/src/core/de.evoal.core.main/src/main/java/de/evoal/core/api/statistics/WriterException.java
+++ b/src/core/de.evoal.core.main/src/main/java/de/evoal/core/api/statistics/io/WriterException.java
@@ -1,4 +1,4 @@
-package de.evoal.core.api.statistics;
+package de.evoal.core.api.statistics.io;
/**
* Exception for signaling errors while writing.
diff --git a/src/core/de.evoal.core.main/src/main/java/de/evoal/core/api/statistics/WriterStrategy.java b/src/core/de.evoal.core.main/src/main/java/de/evoal/core/api/statistics/io/WriterStrategy.java
similarity index 86%
rename from src/core/de.evoal.core.main/src/main/java/de/evoal/core/api/statistics/WriterStrategy.java
rename to src/core/de.evoal.core.main/src/main/java/de/evoal/core/api/statistics/io/WriterStrategy.java
index 0c6a4627..dbe478e7 100644
--- a/src/core/de.evoal.core.main/src/main/java/de/evoal/core/api/statistics/WriterStrategy.java
+++ b/src/core/de.evoal.core.main/src/main/java/de/evoal/core/api/statistics/io/WriterStrategy.java
@@ -1,4 +1,7 @@
-package de.evoal.core.api.statistics;
+package de.evoal.core.api.statistics.io;
+
+import de.evoal.core.api.statistics.writer.Column;
+import de.evoal.core.api.statistics.writer.WriterContext;
import javax.inject.Inject;
import java.util.List;
diff --git a/src/core/de.evoal.core.main/src/main/java/de/evoal/core/api/statistics/package-info.java b/src/core/de.evoal.core.main/src/main/java/de/evoal/core/api/statistics/package-info.java
index 87bd9222..22edd163 100644
--- a/src/core/de.evoal.core.main/src/main/java/de/evoal/core/api/statistics/package-info.java
+++ b/src/core/de.evoal.core.main/src/main/java/de/evoal/core/api/statistics/package-info.java
@@ -1,6 +1,6 @@
/**
* This package contains all API functionality necessary to implement
- * custom {@link de.evoal.core.api.statistics.StatisticsWriter} and to add
- * custom {@link de.evoal.core.api.statistics.WriterStrategy}.
+ * custom {@link de.evoal.core.api.statistics.writer.StatisticsWriter} and to add
+ * custom {@link de.evoal.core.api.statistics.io.WriterStrategy}.
*/
package de.evoal.core.api.statistics;
\ No newline at end of file
diff --git a/src/core/de.evoal.core.main/src/main/java/de/evoal/core/api/statistics/writer/AbstractCandidateStatisticsWriter.java b/src/core/de.evoal.core.main/src/main/java/de/evoal/core/api/statistics/writer/AbstractCandidateStatisticsWriter.java
new file mode 100644
index 00000000..238018e1
--- /dev/null
+++ b/src/core/de.evoal.core.main/src/main/java/de/evoal/core/api/statistics/writer/AbstractCandidateStatisticsWriter.java
@@ -0,0 +1,59 @@
+package de.evoal.core.api.statistics.writer;
+
+import de.evoal.core.api.statistics.Candidate;
+import de.evoal.core.api.statistics.IterationResult;
+import de.evoal.core.api.statistics.io.Writer;
+import de.evoal.core.api.statistics.io.WriterException;
+import de.evoal.core.api.statistics.io.WriterStrategy;
+import de.evoal.languages.model.instance.Instance;
+import lombok.SneakyThrows;
+import lombok.extern.slf4j.Slf4j;
+
+import javax.inject.Inject;
+import java.util.LinkedList;
+import java.util.List;
+import java.util.concurrent.atomic.AtomicInteger;
+
+@Slf4j
+public abstract class AbstractCandidateStatisticsWriter implements StatisticsWriter {
+
+ @Inject
+ protected WriterStrategy strategy;
+
+ private Writer writer;
+
+ @Override
+ public void add(final IterationResult result) {
+ final AtomicInteger counter = new AtomicInteger(0);
+
+ result.candidates()
+ .map(c -> toData(counter.getAndIncrement(), result.iteration(), c))
+ .forEach(r -> {
+ try {
+ writer.addRecord(r);
+ } catch (final WriterException e) {
+ log.warn("Failed to writer statistics record.");
+ }
+ });
+ }
+
+ @Override
+ @SneakyThrows(WriterException.class)
+ public StatisticsWriter init(final Instance configuration) {
+ writer = createWriter();
+
+ return this;
+ }
+
+ protected abstract Writer createWriter() throws WriterException ;
+
+ protected abstract Object [] toData(final int index, final int iteration, final Candidate candidate);
+
+ public void write() {
+ try {
+ strategy.close(writer);
+ } catch (final WriterException e) {
+ log.error("Failed to write statistics:", e);
+ }
+ }
+}
diff --git a/src/core/de.evoal.core.main/src/main/java/de/evoal/core/api/statistics/Column.java b/src/core/de.evoal.core.main/src/main/java/de/evoal/core/api/statistics/writer/Column.java
similarity index 88%
rename from src/core/de.evoal.core.main/src/main/java/de/evoal/core/api/statistics/Column.java
rename to src/core/de.evoal.core.main/src/main/java/de/evoal/core/api/statistics/writer/Column.java
index 8c889217..8cab9328 100644
--- a/src/core/de.evoal.core.main/src/main/java/de/evoal/core/api/statistics/Column.java
+++ b/src/core/de.evoal.core.main/src/main/java/de/evoal/core/api/statistics/writer/Column.java
@@ -1,4 +1,4 @@
-package de.evoal.core.api.statistics;
+package de.evoal.core.api.statistics.writer;
import lombok.AllArgsConstructor;
import lombok.Data;
diff --git a/src/core/de.evoal.core.main/src/main/java/de/evoal/core/api/statistics/ColumnType.java b/src/core/de.evoal.core.main/src/main/java/de/evoal/core/api/statistics/writer/ColumnType.java
similarity index 70%
rename from src/core/de.evoal.core.main/src/main/java/de/evoal/core/api/statistics/ColumnType.java
rename to src/core/de.evoal.core.main/src/main/java/de/evoal/core/api/statistics/writer/ColumnType.java
index f1b8511d..b7269032 100644
--- a/src/core/de.evoal.core.main/src/main/java/de/evoal/core/api/statistics/ColumnType.java
+++ b/src/core/de.evoal.core.main/src/main/java/de/evoal/core/api/statistics/writer/ColumnType.java
@@ -1,4 +1,4 @@
-package de.evoal.core.api.statistics;
+package de.evoal.core.api.statistics.writer;
/**
* Possible column types.
diff --git a/src/core/de.evoal.core.main/src/main/java/de/evoal/core/api/statistics/StatisticsWriter.java b/src/core/de.evoal.core.main/src/main/java/de/evoal/core/api/statistics/writer/StatisticsWriter.java
similarity index 57%
rename from src/core/de.evoal.core.main/src/main/java/de/evoal/core/api/statistics/StatisticsWriter.java
rename to src/core/de.evoal.core.main/src/main/java/de/evoal/core/api/statistics/writer/StatisticsWriter.java
index 50105799..40435739 100644
--- a/src/core/de.evoal.core.main/src/main/java/de/evoal/core/api/statistics/StatisticsWriter.java
+++ b/src/core/de.evoal.core.main/src/main/java/de/evoal/core/api/statistics/writer/StatisticsWriter.java
@@ -1,8 +1,7 @@
-package de.evoal.core.api.statistics;
+package de.evoal.core.api.statistics.writer;
-import de.evoal.core.api.ea.fitness.comparator.FitnessValue;
+import de.evoal.core.api.statistics.IterationResult;
import de.evoal.languages.model.instance.Instance;
-import io.jenetics.engine.EvolutionResult;
/**
* Evaluation-specific data writer for evaluation results. The information
@@ -10,16 +9,16 @@ import io.jenetics.engine.EvolutionResult;
* a certain technique under investigation. What all writer have in common
* is the table-like structure of data (think of a CSV file).
*
- * The framework will call {@link #init(Instance)} once before the evolutionary
- * algorithm starts. While the EA runs, it will call {@link #add(EvolutionResult)}
- * for each generation of individuals. When the EA terminated, the framework calls
- * {@link #write()} once to force a serialization of the data.
+ * The framework will call {@link #init(Instance)} once before the optimisation
+ * algorithm starts. While the algorithm runs, it will call {@link #add(IterationResult)}
+ * for each generation step. When the algorithm terminates, the framework calls
+ * {@link #write()} once to force data serialization.
*/
public interface StatisticsWriter {
/**
- * Adds a evaluation result to the statistics.
+ * Adds an optimisation result to the statistics.
*/
- public void add(final EvolutionResult<?, FitnessValue> result);
+ public void add(final IterationResult result);
/**
* Passes the writer configuration.
diff --git a/src/core/de.evoal.core.main/src/main/java/de/evoal/core/api/statistics/WriterContext.java b/src/core/de.evoal.core.main/src/main/java/de/evoal/core/api/statistics/writer/WriterContext.java
similarity index 96%
rename from src/core/de.evoal.core.main/src/main/java/de/evoal/core/api/statistics/WriterContext.java
rename to src/core/de.evoal.core.main/src/main/java/de/evoal/core/api/statistics/writer/WriterContext.java
index 2b417785..0a1edbda 100644
--- a/src/core/de.evoal.core.main/src/main/java/de/evoal/core/api/statistics/WriterContext.java
+++ b/src/core/de.evoal.core.main/src/main/java/de/evoal/core/api/statistics/writer/WriterContext.java
@@ -1,4 +1,4 @@
-package de.evoal.core.api.statistics;
+package de.evoal.core.api.statistics.writer;
import javax.enterprise.context.ApplicationScoped;
import java.util.*;
diff --git a/src/core/de.evoal.core.main/src/main/java/de/evoal/core/main/Evoal.java b/src/core/de.evoal.core.main/src/main/java/de/evoal/core/main/Evoal.java
index c7cc28ce..92ead262 100644
--- a/src/core/de.evoal.core.main/src/main/java/de/evoal/core/main/Evoal.java
+++ b/src/core/de.evoal.core.main/src/main/java/de/evoal/core/main/Evoal.java
@@ -16,10 +16,6 @@ import org.apache.deltaspike.core.api.provider.BeanProvider;
import org.apache.deltaspike.core.util.metadata.AnnotationInstanceProvider;
import org.slf4j.bridge.SLF4JBridgeHandler;
-import java.io.IOException;
-import java.io.UncheckedIOException;
-import java.lang.module.ModuleReader;
-import java.lang.module.ResolvedModule;
import java.lang.reflect.Field;
import java.util.*;
@@ -29,25 +25,18 @@ import java.util.*;
*/
@Slf4j
public final class Evoal {
+
+ /**
+ * Some libraries use Java's unified logging facility. This method installs
+ * a logging bridge that reroutes all logging from JUL to SLF4J.
+ */
+ private static void installJavaLoggingToSLF4JBridge() {
+ SLF4JBridgeHandler.removeHandlersForRootLogger();
+ SLF4JBridgeHandler.install();
+ }
+
public static void main(final String ... args) {
installJavaLoggingToSLF4JBridge();
-/*
- final ModuleLayer layer = ModuleLayer.boot();
- ModuleLayer.boot().configuration().modules().stream()
- .map(ResolvedModule::reference)
- .forEach(mref -> {
-
- System.out.println(mref.descriptor().name() + " --> " + mref.location().get());
- try (ModuleReader reader = mref.open()) {
- reader.list().forEach(f -> System.out.println(" " + f));
- } catch (IOException ioe) {
- throw new UncheckedIOException(ioe);
- }
- });
-
-
- System.exit(1);
-*/
log.info("Starting up EvoAl");
log.info("Booting CDI container");
@@ -86,11 +75,6 @@ public final class Evoal {
cdiContainer.shutdown();
}
- private static void installJavaLoggingToSLF4JBridge() {
- SLF4JBridgeHandler.removeHandlersForRootLogger();
- SLF4JBridgeHandler.install();
- }
-
private static void printUsage() {
System.out.println();
System.out.println();
diff --git a/src/core/de.evoal.core.main/src/main/java/de/evoal/core/main/ea/comparator/WeightedSumComparator.java b/src/core/de.evoal.core.main/src/main/java/de/evoal/core/main/comparator/WeightedSumComparator.java
similarity index 65%
rename from src/core/de.evoal.core.main/src/main/java/de/evoal/core/main/ea/comparator/WeightedSumComparator.java
rename to src/core/de.evoal.core.main/src/main/java/de/evoal/core/main/comparator/WeightedSumComparator.java
index 90ac991a..4479daef 100644
--- a/src/core/de.evoal.core.main/src/main/java/de/evoal/core/main/ea/comparator/WeightedSumComparator.java
+++ b/src/core/de.evoal.core.main/src/main/java/de/evoal/core/main/comparator/WeightedSumComparator.java
@@ -1,28 +1,27 @@
-package de.evoal.core.main.ea.comparator;
+package de.evoal.core.main.comparator;
-import de.evoal.core.api.ea.fitness.comparator.FitnessComparator;
-import de.evoal.core.api.ea.fitness.comparator.FitnessValue;
+import de.evoal.core.api.optimisation.OptimisationValueComparator;
+import de.evoal.core.api.optimisation.OptimisationValue;
import de.evoal.languages.model.el.DoubleLiteral;
import de.evoal.languages.model.instance.Array;
import de.evoal.languages.model.instance.Instance;
import de.evoal.languages.model.instance.LiteralValue;
-import de.evoal.languages.model.instance.Value;
import javax.enterprise.context.Dependent;
import javax.inject.Named;
@Dependent
@Named("weighted-sum")
-public class WeightedSumComparator implements FitnessComparator {
+public class WeightedSumComparator implements OptimisationValueComparator {
private double [] weights;
@Override
- public FitnessValue compare(final double[] fitnessValues) {
- return WeightedSumFitnessValue.of(weights, fitnessValues);
+ public OptimisationValue toValue(final double[] fitnessValues) {
+ return WeightedSumOptimisationValue.of(weights, fitnessValues);
}
@Override
- public FitnessComparator init(final Instance config) {
+ public OptimisationValueComparator init(final Instance config) {
final Array weights = (Array) config.findAttribute("weights")
.getValue();
diff --git a/src/core/de.evoal.core.main/src/main/java/de/evoal/core/main/ea/comparator/WeightedSumFitnessValue.java b/src/core/de.evoal.core.main/src/main/java/de/evoal/core/main/comparator/WeightedSumOptimisationValue.java
similarity index 72%
rename from src/core/de.evoal.core.main/src/main/java/de/evoal/core/main/ea/comparator/WeightedSumFitnessValue.java
rename to src/core/de.evoal.core.main/src/main/java/de/evoal/core/main/comparator/WeightedSumOptimisationValue.java
index e7f0bb89..5246a7b7 100644
--- a/src/core/de.evoal.core.main/src/main/java/de/evoal/core/main/ea/comparator/WeightedSumFitnessValue.java
+++ b/src/core/de.evoal.core.main/src/main/java/de/evoal/core/main/comparator/WeightedSumOptimisationValue.java
@@ -1,6 +1,6 @@
-package de.evoal.core.main.ea.comparator;
+package de.evoal.core.main.comparator;
-import de.evoal.core.api.ea.fitness.comparator.FitnessValue;
+import de.evoal.core.api.optimisation.OptimisationValue;
import de.evoal.core.api.utils.Requirements;
import lombok.Getter;
import lombok.NonNull;
@@ -9,12 +9,12 @@ import java.util.Arrays;
import static de.evoal.core.api.utils.Requirements.requireSameSize;
-public class WeightedSumFitnessValue implements FitnessValue {
+public class WeightedSumOptimisationValue implements OptimisationValue {
@Getter
private final @NonNull double[] fitnessValues;
private final @NonNull double[] normalizedWeights;
- private WeightedSumFitnessValue(final @NonNull double[] weights, final @NonNull double[] fitnessValues) {
+ private WeightedSumOptimisationValue(final @NonNull double[] weights, final @NonNull double[] fitnessValues) {
Requirements.requireSameSize(weights, fitnessValues);
this.normalizedWeights = new double[weights.length];
@@ -27,13 +27,13 @@ public class WeightedSumFitnessValue implements FitnessValue {
}
}
- public static FitnessValue of(final double [] weights, final double [] fitnessValues) {
- return new WeightedSumFitnessValue(weights, fitnessValues);
+ public static OptimisationValue of(final double [] weights, final double [] fitnessValues) {
+ return new WeightedSumOptimisationValue(weights, fitnessValues);
}
@Override
- public int compareTo(final FitnessValue other) {
- if(!(other instanceof WeightedSumFitnessValue)) {
+ public int compareTo(final OptimisationValue other) {
+ if(!(other instanceof WeightedSumOptimisationValue)) {
throw new IllegalArgumentException("Only allowed to compare WeightedSumFitnessValue");
}
@@ -42,7 +42,7 @@ public class WeightedSumFitnessValue implements FitnessValue {
for(int index = 0; index < fitnessValues.length; ++index) {
ownFitness = ownFitness + this.normalizedWeights[index] * Math.abs(this.fitnessValues[index]);
- otherFitness = otherFitness + this.normalizedWeights[index] * Math.abs(((WeightedSumFitnessValue)other).getFitnessValues()[index]);
+ otherFitness = otherFitness + this.normalizedWeights[index] * Math.abs(((WeightedSumOptimisationValue)other).getFitnessValues()[index]);
}
return ownFitness == otherFitness ? 0 : (int)Math.signum(ownFitness - otherFitness);
diff --git a/src/core/de.evoal.core.main/src/main/java/de/evoal/core/main/ea/comparator/ParetoComparator.java b/src/core/de.evoal.core.main/src/main/java/de/evoal/core/main/ea/comparator/ParetoComparator.java
deleted file mode 100644
index 21baf965..00000000
--- a/src/core/de.evoal.core.main/src/main/java/de/evoal/core/main/ea/comparator/ParetoComparator.java
+++ /dev/null
@@ -1,23 +0,0 @@
-package de.evoal.core.main.ea.comparator;
-
-import de.evoal.core.api.ea.fitness.comparator.FitnessComparator;
-import de.evoal.core.api.ea.fitness.comparator.FitnessValue;
-import de.evoal.languages.model.instance.Instance;
-
-import javax.enterprise.context.ApplicationScoped;
-
-import javax.inject.Named;
-
-@ApplicationScoped
-@Named("pareto")
-public class ParetoComparator implements FitnessComparator {
- @Override
- public FitnessValue compare(final double[] fitnessValues) {
- return ParetoFitnessValue.of(fitnessValues);
- }
-
- @Override
- public ParetoComparator init(Instance config) {
- return this;
- }
-}
diff --git a/src/core/de.evoal.core.main/src/main/java/de/evoal/core/main/jenetics/ConstraintList.java b/src/core/de.evoal.core.main/src/main/java/de/evoal/core/main/jenetics/ConstraintList.java
deleted file mode 100644
index 1f3c7c54..00000000
--- a/src/core/de.evoal.core.main/src/main/java/de/evoal/core/main/jenetics/ConstraintList.java
+++ /dev/null
@@ -1,32 +0,0 @@
-package de.evoal.core.main.jenetics;
-
-import de.evoal.core.api.ea.fitness.comparator.FitnessValue;
-import io.jenetics.Gene;
-import io.jenetics.Phenotype;
-import io.jenetics.engine.Constraint;
-
-import java.util.List;
-
-public class ConstraintList<G extends Gene<?, G>> implements Constraint<G, FitnessValue> {
- private final List<Constraint<G, FitnessValue>> constraints;
-
- public ConstraintList(final List<Constraint<G, FitnessValue>> constraints) {
- this.constraints = constraints;
- }
-
- @Override
- public boolean test(final Phenotype<G, FitnessValue> individual) {
- return constraints.stream().allMatch(c -> c.test(individual));
- }
-
- @Override
- public Phenotype<G, FitnessValue> repair(Phenotype<G, FitnessValue> individual, long generation) {
- Phenotype<G, FitnessValue> phenotype = individual;
-
- for(final Constraint<G, FitnessValue> c : constraints) {
- phenotype = c.repair(phenotype, generation);
- }
-
- return phenotype;
- }
-}
diff --git a/src/core/de.evoal.core.main/src/main/java/de/evoal/core/main/language/ModuleBuiltinProvider.java b/src/core/de.evoal.core.main/src/main/java/de/evoal/core/main/language/ModuleBuiltinProvider.java
index bc783c43..2842415e 100644
--- a/src/core/de.evoal.core.main/src/main/java/de/evoal/core/main/language/ModuleBuiltinProvider.java
+++ b/src/core/de.evoal.core.main/src/main/java/de/evoal/core/main/language/ModuleBuiltinProvider.java
@@ -3,14 +3,77 @@ package de.evoal.core.main.language;
import de.evoal.languages.model.utils.builtin.BuiltinProvider;
import lombok.extern.slf4j.Slf4j;
+import java.io.IOException;
+import java.lang.module.ModuleReader;
+import java.lang.module.ModuleReference;
+import java.lang.module.ResolvedModule;
import java.net.URI;
-import java.util.Collection;
-import java.util.Collections;
+import java.nio.file.FileSystem;
+import java.nio.file.FileSystems;
+import java.nio.file.Path;
+import java.nio.file.Paths;
+import java.util.*;
+import java.util.stream.Collectors;
+import java.util.stream.Stream;
+/**
+ * Builtin provider for Java SE module environment.
+ */
@Slf4j
public class ModuleBuiltinProvider implements BuiltinProvider {
+ private static Map<String, Collection<URI>> builtinCache = new HashMap<>();
+
@Override
public Collection<URI> findBuiltins(final String name) {
- return Collections.emptyList();
+ Collection<URI> result = builtinCache.get(name);
+
+ if(result != null) {
+ return result;
+ }
+
+ result = ModuleLayer.boot()
+ .configuration()
+ .modules()
+ .stream()
+ .map(ResolvedModule::reference)
+ .flatMap(m -> findBuiltins(m, name))
+ .collect(Collectors.toList());
+
+ log.info("Found {} builtins for {}.", result.size(), name);
+ result.forEach(u -> log.info(" {}", u));
+ builtinCache.put(name, result);
+
+ return result;
+ }
+
+ private Stream<URI> findBuiltins(final ModuleReference module, final String basename) {
+ final String completeBase = "META-INF/definitions/" + basename;
+
+ try (ModuleReader reader = module.open()) {
+ return reader.list()
+ .filter(f -> f.startsWith(completeBase))
+ .filter(f -> f.endsWith(".dl"))
+ .map(f -> {
+ try {
+ log.info("Found builtin {} in {}.", f, module.location().get().getPath());
+ final Path modulePath = Paths.get(module.location().get().getPath());
+
+ if(modulePath.toFile().isDirectory()) {
+ return modulePath.resolve(f).toUri();
+ } else {
+ final FileSystem zipFS = FileSystems.newFileSystem(modulePath);
+ final Path fileInZip = zipFS.getPath(f);
+
+ return fileInZip.toUri();
+ }
+ } catch (final Exception e) {
+ log.error("Unable to create URI for {} in {}.", f, module.location().get(), e);
+ return null;
+ }
+ })
+ .filter(Objects::nonNull);
+ } catch (IOException ioe) {
+ return Stream.<URI>builder().build();
+ }
}
}
diff --git a/src/core/de.evoal.core.main/src/main/java/de/evoal/core/main/producer/ConfigurationValueProducer.java b/src/core/de.evoal.core.main/src/main/java/de/evoal/core/main/producer/ConfigurationValueProducer.java
index ffe4d141..13262c3b 100644
--- a/src/core/de.evoal.core.main/src/main/java/de/evoal/core/main/producer/ConfigurationValueProducer.java
+++ b/src/core/de.evoal.core.main/src/main/java/de/evoal/core/main/producer/ConfigurationValueProducer.java
@@ -50,6 +50,19 @@ public class ConfigurationValueProducer {
return lookup(board.get(value.entry()), value.access());
}
+ @Produces
+ @ConfigurationValue(entry = CoreBlackboardEntries.OPTIMISATION_CONFIGURATION, access = "")
+ public final Instance [] injectInstanceArrayValue(final InjectionPoint ip, final Blackboard board) {
+ final ConfigurationValue value = ip.getAnnotated().getAnnotation(ConfigurationValue.class);
+
+ final Object [] array = lookup(board.get(value.entry()), value.access());
+ final Instance [] copy = new Instance[array.length];
+
+ System.arraycopy(array, 0, copy, 0, copy.length);
+
+ return copy;
+ }
+
@Produces
@ConfigurationValue(entry = CoreBlackboardEntries.OPTIMISATION_CONFIGURATION, access = "")
public final Instance injectInstanceValue(final InjectionPoint ip, final Blackboard board) {
@@ -79,6 +92,7 @@ public class ConfigurationValueProducer {
}
private static <T> T lookup(final OptimisationModel model, final String access) {
+ log.info("Looking up configuration value {}", access);
return LanguageHelper.lookup(model.getInstance(), access);
}
}
diff --git a/src/core/de.evoal.core.main/src/main/java/de/evoal/core/main/producer/SpecificationProducer.java b/src/core/de.evoal.core.main/src/main/java/de/evoal/core/main/producer/SpecificationProducer.java
index faf31bd3..c0edffbc 100644
--- a/src/core/de.evoal.core.main/src/main/java/de/evoal/core/main/producer/SpecificationProducer.java
+++ b/src/core/de.evoal.core.main/src/main/java/de/evoal/core/main/producer/SpecificationProducer.java
@@ -13,6 +13,7 @@ import javax.enterprise.context.ApplicationScoped;
import javax.enterprise.context.Dependent;
import javax.enterprise.inject.Produces;
import javax.inject.Named;
+import java.util.Arrays;
import java.util.List;
import java.util.stream.Collectors;
@@ -21,9 +22,8 @@ public class SpecificationProducer {
@Produces
@Dependent
@Named("genotype-description")
- public List<DataDescription> createSourceSpecification(final @ConfigurationValue(entry = CoreBlackboardEntries.OPTIMISATION_CONFIGURATION, access = "algorithm.genotype") Array genotype) {
- final List<DataDescription> descriptors = genotype.getValues()
- .stream()
+ public List<DataDescription> createSourceSpecification(final @ConfigurationValue(entry = CoreBlackboardEntries.OPTIMISATION_CONFIGURATION, access = "algorithm.genotype") Instance [] genotype) {
+ final List<DataDescription> descriptors = Arrays.stream(genotype)
.map(Instance.class::cast)
.map(i -> i.findAttribute("genes"))
.map(Attribute::getValue)
diff --git a/src/core/de.evoal.core.main/src/main/java/de/evoal/core/main/search/HeuristicSearchEvaluation.java b/src/core/de.evoal.core.main/src/main/java/de/evoal/core/main/search/HeuristicSearchEvaluation.java
index d5cabac5..74e94493 100644
--- a/src/core/de.evoal.core.main/src/main/java/de/evoal/core/main/search/HeuristicSearchEvaluation.java
+++ b/src/core/de.evoal.core.main/src/main/java/de/evoal/core/main/search/HeuristicSearchEvaluation.java
@@ -1,19 +1,17 @@
package de.evoal.core.main.search;
import de.evoal.core.api.board.CoreBlackboardEntries;
-import de.evoal.core.api.cdi.Application;
-import de.evoal.core.api.cdi.BeanFactory;
-import de.evoal.core.api.cdi.BlackboardValue;
-import de.evoal.core.api.cdi.MainClass;
+import de.evoal.core.api.cdi.*;
+import de.evoal.core.api.optimisation.OptimisationAlgorithm;
import de.evoal.core.api.properties.Properties;
import de.evoal.core.api.properties.PropertiesPair;
import de.evoal.core.api.board.Blackboard;
import javax.enterprise.context.ApplicationScoped;
-import de.evoal.core.api.statistics.Column;
-import de.evoal.core.api.statistics.ColumnType;
-import de.evoal.core.api.statistics.WriterContext;
-import de.evoal.core.main.ea.search.EvolutionaryAlgorithmSearch;
+import de.evoal.core.api.statistics.writer.Column;
+import de.evoal.core.api.statistics.writer.ColumnType;
+import de.evoal.core.api.statistics.writer.WriterContext;
+import de.evoal.languages.model.instance.Instance;
import lombok.extern.slf4j.Slf4j;
import org.apache.commons.math3.util.Pair;
@@ -65,6 +63,10 @@ public class HeuristicSearchEvaluation implements MainClass {
private Column targetColumn;
private Column runColumn;
+ @Inject
+ @ConfigurationValue(entry = CoreBlackboardEntries.OPTIMISATION_CONFIGURATION, access = "algorithm")
+ private Instance algorithmConfiguration;
+
@Override
public void run() {
log.info("Running heuristic search evaluation with the following configuration:");
@@ -113,8 +115,9 @@ public class HeuristicSearchEvaluation implements MainClass {
board.bind(CoreBlackboardEntries.EVALUATION_RUN, run);
context.bindColumn(runColumn, i);
- BeanFactory.create(EvolutionaryAlgorithmSearch.class)
- .run();
+ BeanFactory.create(OptimisationAlgorithm.class)
+ .init(algorithmConfiguration)
+ .run();
}
}
diff --git a/src/core/de.evoal.core.main/src/main/java/de/evoal/core/main/search/HeuristicSearchMain.java b/src/core/de.evoal.core.main/src/main/java/de/evoal/core/main/search/HeuristicSearchMain.java
index 42900dd8..8f0d469e 100644
--- a/src/core/de.evoal.core.main/src/main/java/de/evoal/core/main/search/HeuristicSearchMain.java
+++ b/src/core/de.evoal.core.main/src/main/java/de/evoal/core/main/search/HeuristicSearchMain.java
@@ -9,14 +9,13 @@ import de.evoal.core.api.cdi.MainClass;
import de.evoal.core.api.properties.Properties;
import javax.enterprise.context.ApplicationScoped;
-import de.evoal.core.api.search.OptimisationAlgorithm;
-import de.evoal.core.api.statistics.ColumnType;
-import de.evoal.core.api.statistics.WriterContext;
+import de.evoal.core.api.optimisation.OptimisationAlgorithm;
+import de.evoal.core.api.statistics.writer.ColumnType;
+import de.evoal.core.api.statistics.writer.WriterContext;
import de.evoal.languages.model.instance.Instance;
import org.apache.commons.math3.util.Pair;
import javax.inject.Inject;
-import javax.inject.Named;
import java.io.File;
import java.util.stream.Stream;
diff --git a/src/core/de.evoal.core.main/src/main/java/de/evoal/core/main/search/HeuristicSearchUtils.java b/src/core/de.evoal.core.main/src/main/java/de/evoal/core/main/search/HeuristicSearchUtils.java
index 4e1abf34..bfe4ac00 100644
--- a/src/core/de.evoal.core.main/src/main/java/de/evoal/core/main/search/HeuristicSearchUtils.java
+++ b/src/core/de.evoal.core.main/src/main/java/de/evoal/core/main/search/HeuristicSearchUtils.java
@@ -1,11 +1,9 @@
package de.evoal.core.main.search;
-import de.evoal.core.api.statistics.Column;
-import de.evoal.core.api.statistics.ColumnType;
-import de.evoal.core.api.statistics.WriterContext;
+import de.evoal.core.api.statistics.writer.Column;
+import de.evoal.core.api.statistics.writer.ColumnType;
+import de.evoal.core.api.statistics.writer.WriterContext;
import lombok.extern.slf4j.Slf4j;
-import org.slf4j.Logger;
-import org.slf4j.LoggerFactory;
import java.io.File;
diff --git a/src/core/de.evoal.core.main/src/main/java/de/evoal/core/main/statistics/StatisticsFactory.java b/src/core/de.evoal.core.main/src/main/java/de/evoal/core/main/statistics/StatisticsFactory.java
index 1da6eb6a..dcde046a 100644
--- a/src/core/de.evoal.core.main/src/main/java/de/evoal/core/main/statistics/StatisticsFactory.java
+++ b/src/core/de.evoal.core.main/src/main/java/de/evoal/core/main/statistics/StatisticsFactory.java
@@ -1,12 +1,14 @@
package de.evoal.core.main.statistics;
import de.evoal.core.api.board.CoreBlackboardEntries;
+import de.evoal.core.api.cdi.BeanFactory;
import de.evoal.core.api.cdi.ConfigurationValue;
-import de.evoal.core.api.statistics.StatisticsWriter;
+import de.evoal.core.api.statistics.writer.StatisticsWriter;
import de.evoal.core.api.utils.Requirements;
+import de.evoal.core.main.statistics.internal.MultipleStatisticsWriter;
import de.evoal.languages.model.instance.Array;
import de.evoal.languages.model.instance.Instance;
-import de.evoal.core.main.statistics.internal.MultipleStatisticsWriter;
+
import javax.enterprise.context.ApplicationScoped;
import javax.enterprise.context.Dependent;
import javax.enterprise.inject.Produces;
@@ -28,7 +30,7 @@ public class StatisticsFactory {
final StatisticsWriter [] writers = array.getValues()
.stream()
.map(Instance.class::cast)
- .map(i -> new Pair<>(BeanProvider.getContextualReference(i.getDefinition().getName(), false, StatisticsWriter.class), i))
+ .map(i -> new Pair<>(BeanFactory.create(i.getDefinition().getName(), StatisticsWriter.class), i))
.map(p -> p.getFirst().init(p.getSecond()))
.toArray(i -> new StatisticsWriter[i]);
diff --git a/src/core/de.evoal.core.main/src/main/java/de/evoal/core/main/statistics/fitness/FitnessStatistics.java b/src/core/de.evoal.core.main/src/main/java/de/evoal/core/main/statistics/fitness/FitnessStatistics.java
index c5c323f6..2318297e 100644
--- a/src/core/de.evoal.core.main/src/main/java/de/evoal/core/main/statistics/fitness/FitnessStatistics.java
+++ b/src/core/de.evoal.core.main/src/main/java/de/evoal/core/main/statistics/fitness/FitnessStatistics.java
@@ -1,14 +1,14 @@
package de.evoal.core.main.statistics.fitness;
-import de.evoal.core.api.ea.fitness.comparator.FitnessValue;
import de.evoal.core.api.properties.PropertiesSpecification;
import de.evoal.core.api.statistics.*;
-import de.evoal.languages.model.instance.Instance;
-import io.jenetics.Phenotype;
-import io.jenetics.engine.EvolutionResult;
-import io.jenetics.util.ISeq;
+import de.evoal.core.api.statistics.io.Writer;
+import de.evoal.core.api.statistics.io.WriterException;
+import de.evoal.core.api.statistics.writer.AbstractCandidateStatisticsWriter;
+import de.evoal.core.api.statistics.writer.Column;
+import de.evoal.core.api.statistics.writer.ColumnType;
+
import javax.enterprise.context.Dependent;
-import lombok.SneakyThrows;
import lombok.extern.slf4j.Slf4j;
import javax.inject.Inject;
@@ -23,26 +23,14 @@ import java.util.List;
@Slf4j
@Named("fitness-per-individual")
@Dependent
-public class FitnessStatistics implements StatisticsWriter {
+public class FitnessStatistics extends AbstractCandidateStatisticsWriter {
@Inject
- @Named("optimization-function-output")
+ @Named("optimisation-function-output")
private Provider<PropertiesSpecification> targetSpecification;
- @Inject
- private WriterStrategy strategy;
-
- private Writer writer;
-
@Override
- @SneakyThrows(WriterException.class)
- public StatisticsWriter init(Instance configuration) {
- createWriter();
-
- return this;
- }
-
- private void createWriter() throws WriterException {
+ protected Writer createWriter() throws WriterException {
final List<Column> columns = new LinkedList<>();
columns.add(new Column("generation", ColumnType.Integer));
@@ -52,38 +40,20 @@ public class FitnessStatistics implements StatisticsWriter {
columns.add(new Column("fitness-value-" + targetSpecification.get().get(i).name(), ColumnType.Double));
}
- writer = strategy.create("fitness-by-individual", columns);
+ return strategy.create("fitness-by-individual", columns);
}
- private Object[] dataOfPhenotype(final int index, final long generation, Phenotype<?, FitnessValue> phenotype) {
+ @Override
+ protected Object[] toData(final int index, final int iteration, final Candidate candidate) {
final Object [] data = new Object[2 + targetSpecification.get().size()];
- data[0] = generation;
+ data[0] = iteration;
data[1] = index;
- final Object [] fitnessValues = phenotype.fitness().toStatistics();
+ final Object [] fitnessValues = candidate.value().toStatistics();
- for(int i = 0; i < fitnessValues.length; ++i) {
- data[2 + i] = fitnessValues[i];
- }
+ System.arraycopy(fitnessValues, 0, data, 2, fitnessValues.length);
return data;
}
-
- @SneakyThrows(WriterException.class)
- public void add(final EvolutionResult<?, FitnessValue> evolutionResult) {
- final ISeq<Phenotype<?, FitnessValue>> population = (ISeq<Phenotype<?, FitnessValue>>)(Object)evolutionResult.population();
-
- for(int i = 0; i < population.size(); ++i) {
- writer.addRecord(dataOfPhenotype(i, evolutionResult.generation(), population.get(i)));
- }
- }
-
- public void write() {
- try {
- strategy.close(writer);
- } catch (final WriterException e) {
- log.error("Failed to write statistics:", e);
- }
- }
}
diff --git a/src/core/de.evoal.core.main/src/main/java/de/evoal/core/main/statistics/fitness/OptimisingStatistics.java b/src/core/de.evoal.core.main/src/main/java/de/evoal/core/main/statistics/fitness/OptimisingStatistics.java
new file mode 100644
index 00000000..5709cf8d
--- /dev/null
+++ b/src/core/de.evoal.core.main/src/main/java/de/evoal/core/main/statistics/fitness/OptimisingStatistics.java
@@ -0,0 +1,66 @@
+package de.evoal.core.main.statistics.fitness;
+
+import de.evoal.core.api.optimisation.OptimisationFunction;
+import de.evoal.core.api.properties.Properties;
+import de.evoal.core.api.properties.PropertiesSpecification;
+import de.evoal.core.api.statistics.*;
+import de.evoal.core.api.statistics.io.Writer;
+import de.evoal.core.api.statistics.io.WriterException;
+import de.evoal.core.api.statistics.writer.AbstractCandidateStatisticsWriter;
+import de.evoal.core.api.statistics.writer.Column;
+import de.evoal.core.api.statistics.writer.ColumnType;
+import lombok.extern.slf4j.Slf4j;
+
+import javax.enterprise.context.Dependent;
+import javax.inject.Inject;
+import javax.inject.Named;
+import java.util.LinkedList;
+import java.util.List;
+
+/**
+ * Small helper class for collecting and writing the generation-based statistics.
+ */
+@Slf4j
+@Named("optimising-per-individual")
+@Dependent
+public class OptimisingStatistics extends AbstractCandidateStatisticsWriter {
+
+ @Inject
+ @Named("optimisation-function")
+ private OptimisationFunction optimisationFunction;
+
+ @Inject
+ @Named("optimisation-function-output")
+ private PropertiesSpecification targetSpecification;
+
+ @Override
+ protected Writer createWriter() throws WriterException {
+ final List<Column> columns = new LinkedList<>();
+
+ columns.add(new Column("generation", ColumnType.Integer));
+ columns.add(new Column("index", ColumnType.Integer));
+
+ for(int i = 0; i < targetSpecification.size(); ++i) {
+ columns.add(new Column("optimisation-value-" + targetSpecification.get(i).name(), ColumnType.Double));
+ }
+
+ return strategy.create("optimisation-by-individual", columns);
+ }
+
+ @Override
+ protected Object [] toData(final int index, final int iteration, final Candidate candidate) {
+ final Object [] data = new Object[2 + targetSpecification.size()];
+
+ data[0] = iteration;
+ data[1] = index;
+
+ final Properties individual = candidate.searchSpaceRepresentation();
+ final double [] raw = optimisationFunction.evaluate(individual);
+
+ for(int i = 0; i < raw.length; ++i) {
+ data[2 + i] = raw[i];
+ }
+
+ return data;
+ }
+}
diff --git a/src/core/de.evoal.core.main/src/main/java/de/evoal/core/main/statistics/fitness/OptimizingStatistics.java b/src/core/de.evoal.core.main/src/main/java/de/evoal/core/main/statistics/fitness/OptimizingStatistics.java
deleted file mode 100644
index f8a1b0b6..00000000
--- a/src/core/de.evoal.core.main/src/main/java/de/evoal/core/main/statistics/fitness/OptimizingStatistics.java
+++ /dev/null
@@ -1,104 +0,0 @@
-package de.evoal.core.main.statistics.fitness;
-
-import de.evoal.core.api.board.BlackboardEntry;
-import de.evoal.core.api.cdi.BlackboardValue;
-import de.evoal.core.api.ea.codec.CustomCodec;
-import de.evoal.core.api.ea.fitness.FitnessFunction;
-import de.evoal.core.api.ea.fitness.comparator.FitnessValue;
-import de.evoal.core.api.properties.Properties;
-import de.evoal.core.api.properties.PropertiesSpecification;
-import de.evoal.core.api.statistics.*;
-import de.evoal.languages.model.instance.Instance;
-import io.jenetics.Genotype;
-import io.jenetics.Phenotype;
-import io.jenetics.engine.EvolutionResult;
-import io.jenetics.util.ISeq;
-import lombok.SneakyThrows;
-import lombok.extern.slf4j.Slf4j;
-
-import javax.enterprise.context.Dependent;
-import javax.inject.Inject;
-import javax.inject.Named;
-import javax.inject.Provider;
-import java.util.LinkedList;
-import java.util.List;
-
-/**
- * Small helper class for collecting and writing the generation-based statistics.
- */
-@Slf4j
-@Named("optimizing-per-individual")
-@Dependent
-public class OptimizingStatistics implements StatisticsWriter {
-
- @Inject
- private CustomCodec codec;
-
- @Inject
- @Named("optimization-function")
- private FitnessFunction optimization;
-
- @Inject
- @Named("optimization-function-output")
- private PropertiesSpecification targetSpecification;
-
- @Inject
- private WriterStrategy strategy;
-
- private Writer writer;
-
- @Override
- @SneakyThrows(WriterException.class)
- public StatisticsWriter init(Instance configuration) {
- createWriter();
-
- return this;
- }
-
- private void createWriter() throws WriterException {
- final List<Column> columns = new LinkedList<>();
-
- columns.add(new Column("generation", ColumnType.Integer));
- columns.add(new Column("index", ColumnType.Integer));
-
- for(int i = 0; i < targetSpecification.size(); ++i) {
- columns.add(new Column("optimization-value-" + targetSpecification.get(i).name(), ColumnType.Double));
- }
-
- writer = strategy.create("optimization-by-individual", columns);
- }
-
- private Object[] dataOfPhenotype(final int index, final long generation, Phenotype<?, FitnessValue> phenotype) {
- final Object [] data = new Object[2 + targetSpecification.size()];
-
- data[0] = generation;
- data[1] = index;
-
- final Genotype<?> genotype = phenotype.genotype();
- final Properties individual = (Properties)codec.decode(genotype);
- final double [] raw = optimization.evaluate(individual);
-
- for(int i = 0; i < raw.length; ++i) {
- data[2 + i] = raw[i];
- }
-
- return data;
- }
-
- @SneakyThrows(WriterException.class)
- public void add(final EvolutionResult<?, FitnessValue> evolutionResult) {
- final ISeq<Phenotype<?, FitnessValue>> population = (ISeq<Phenotype<?, FitnessValue>>)(Object)evolutionResult.population();
-
- for(int i = 0; i < population.size(); ++i) {
- writer.addRecord(dataOfPhenotype(i, evolutionResult.generation(), population.get(i)));
- }
- }
-
- public void write() {
- try {
- strategy.close(writer);
- } catch (final WriterException e) {
- log.error("Failed to write statistics:", e);
- }
- }
-}
diff --git a/src/core/de.evoal.core.main/src/main/java/de/evoal/core/main/statistics/individuals/IndividualStatistics.java b/src/core/de.evoal.core.main/src/main/java/de/evoal/core/main/statistics/individuals/IndividualStatistics.java
index b8f58b5c..c4473223 100644
--- a/src/core/de.evoal.core.main/src/main/java/de/evoal/core/main/statistics/individuals/IndividualStatistics.java
+++ b/src/core/de.evoal.core.main/src/main/java/de/evoal/core/main/statistics/individuals/IndividualStatistics.java
@@ -1,26 +1,28 @@
package de.evoal.core.main.statistics.individuals;
-import de.evoal.core.api.ea.fitness.comparator.FitnessValue;
+import de.evoal.core.api.statistics.IterationResult;
import de.evoal.core.api.statistics.*;
+import de.evoal.core.api.statistics.io.Writer;
+import de.evoal.core.api.statistics.io.WriterException;
+import de.evoal.core.api.statistics.io.WriterStrategy;
+import de.evoal.core.api.statistics.writer.AbstractCandidateStatisticsWriter;
+import de.evoal.core.api.statistics.writer.Column;
+import de.evoal.core.api.statistics.writer.ColumnType;
+import de.evoal.core.api.statistics.writer.StatisticsWriter;
import de.evoal.languages.model.instance.Instance;
-import de.evoal.core.api.ea.codec.CustomCodec;
import de.evoal.core.api.properties.Properties;
import de.evoal.core.api.properties.PropertiesSpecification;
-import io.jenetics.Genotype;
import javax.annotation.PostConstruct;
import javax.enterprise.context.Dependent;
-import io.jenetics.Phenotype;
-import io.jenetics.engine.EvolutionResult;
-import io.jenetics.util.ISeq;
import lombok.SneakyThrows;
import lombok.extern.slf4j.Slf4j;
-import javax.enterprise.inject.Produces;
import javax.inject.Inject;
import javax.inject.Named;
import java.util.ArrayList;
import java.util.List;
+import java.util.concurrent.atomic.AtomicInteger;
/**
* Small helper class for collecting and writing the generation-based statistics.
@@ -28,33 +30,13 @@ import java.util.List;
@Slf4j
@Named("individuals")
@Dependent
-public class IndividualStatistics implements StatisticsWriter {
- /**
- * Encoding for converting between ea and domain.
- */
- @Inject
- private CustomCodec encoding;
+public class IndividualStatistics extends AbstractCandidateStatisticsWriter {
@Inject @Named("genotype-specification")
private PropertiesSpecification sourceSpecification;
- @Inject
- private WriterStrategy strategy;
-
- private Writer writer;
-
- @PostConstruct
- @SneakyThrows(WriterException.class)
- private void init() {
- createWriter();
- }
-
@Override
- public StatisticsWriter init(Instance configuration) {
- return this;
- }
-
- private void createWriter() throws WriterException {
+ protected Writer createWriter() throws WriterException {
final List<Column> columns = new ArrayList<>();
columns.add(new Column("generation", ColumnType.Integer));
@@ -65,18 +47,18 @@ public class IndividualStatistics implements StatisticsWriter {
columns.add(new Column(sourceSpecification.getProperties().get(i).name(), ColumnType.Double));
}
- writer = strategy.create("individuals", columns);
+ return strategy.create("individuals", columns);
}
- private Object[] dataOfPhenotype(final int index, final long generation, Phenotype<?, FitnessValue> phenotype) {
+ @Override
+ protected Object[] toData(final int index, final int iteration, final Candidate candidate) {
final Object [] data = new Object[3 + sourceSpecification.size()];
- final Genotype<?> genotype = phenotype.genotype();
- final Properties individual = (Properties) encoding.decode(genotype);
+ final Properties individual = candidate.searchSpaceRepresentation();
- data[0] = generation;
+ data[0] = iteration;
data[1] = index;
- data[2] = phenotype.age(generation);
+ data[2] = candidate.age();
for(int i = 0; i < individual.size(); ++i) {
data[3 + i] = individual.getValues()[i];
@@ -84,21 +66,4 @@ public class IndividualStatistics implements StatisticsWriter {
return data;
}
-
- @SneakyThrows(WriterException.class)
- public void add(final EvolutionResult<?, FitnessValue> evolutionResult) {
- final ISeq<Phenotype<?, FitnessValue>> population = (ISeq<Phenotype<?, FitnessValue>>)(Object)evolutionResult.population();
-
- for(int i = 0; i < population.size(); ++i) {
- writer.addRecord(dataOfPhenotype(i, evolutionResult.generation(), population.get(i)));
- }
- }
-
- public void write() {
- try {
- strategy.close(writer);
- } catch (final WriterException e) {
- log.error("Failed to write statistics:", e);
- }
- }
}
diff --git a/src/core/de.evoal.core.main/src/main/java/de/evoal/core/main/statistics/internal/MultipleStatisticsWriter.java b/src/core/de.evoal.core.main/src/main/java/de/evoal/core/main/statistics/internal/MultipleStatisticsWriter.java
index 921a2ad4..9046da28 100644
--- a/src/core/de.evoal.core.main/src/main/java/de/evoal/core/main/statistics/internal/MultipleStatisticsWriter.java
+++ b/src/core/de.evoal.core.main/src/main/java/de/evoal/core/main/statistics/internal/MultipleStatisticsWriter.java
@@ -1,9 +1,8 @@
package de.evoal.core.main.statistics.internal;
-import de.evoal.core.api.ea.fitness.comparator.FitnessValue;
+import de.evoal.core.api.statistics.IterationResult;
import de.evoal.languages.model.instance.Instance;
-import de.evoal.core.api.statistics.StatisticsWriter;
-import io.jenetics.engine.EvolutionResult;
+import de.evoal.core.api.statistics.writer.StatisticsWriter;
import java.util.Arrays;
@@ -15,8 +14,8 @@ public class MultipleStatisticsWriter implements StatisticsWriter {
}
@Override
- public void add(final EvolutionResult<?, FitnessValue> evolutionResult) {
- Arrays.stream(writers).forEach(w -> w.add(evolutionResult));
+ public void add(final IterationResult result) {
+ Arrays.stream(writers).forEach(w -> w.add(result));
}
@Override
diff --git a/src/core/de.evoal.core.main/src/main/java/de/evoal/core/main/statistics/writer/csv/CsvStrategy.java b/src/core/de.evoal.core.main/src/main/java/de/evoal/core/main/statistics/io/csv/CsvStrategy.java
similarity index 82%
rename from src/core/de.evoal.core.main/src/main/java/de/evoal/core/main/statistics/writer/csv/CsvStrategy.java
rename to src/core/de.evoal.core.main/src/main/java/de/evoal/core/main/statistics/io/csv/CsvStrategy.java
index f2bb0506..431192e8 100644
--- a/src/core/de.evoal.core.main/src/main/java/de/evoal/core/main/statistics/writer/csv/CsvStrategy.java
+++ b/src/core/de.evoal.core.main/src/main/java/de/evoal/core/main/statistics/io/csv/CsvStrategy.java
@@ -1,11 +1,11 @@
-package de.evoal.core.main.statistics.writer.csv;
+package de.evoal.core.main.statistics.io.csv;
import de.evoal.core.api.board.CoreBlackboardEntries;
import de.evoal.core.api.cdi.BlackboardValue;
-import de.evoal.core.api.statistics.Column;
-import de.evoal.core.api.statistics.Writer;
-import de.evoal.core.api.statistics.WriterException;
-import de.evoal.core.api.statistics.WriterStrategy;
+import de.evoal.core.api.statistics.writer.Column;
+import de.evoal.core.api.statistics.io.Writer;
+import de.evoal.core.api.statistics.io.WriterException;
+import de.evoal.core.api.statistics.io.WriterStrategy;
import javax.enterprise.context.ApplicationScoped;
import javax.inject.Inject;
diff --git a/src/core/de.evoal.core.main/src/main/java/de/evoal/core/main/statistics/writer/csv/CsvWriter.java b/src/core/de.evoal.core.main/src/main/java/de/evoal/core/main/statistics/io/csv/CsvWriter.java
similarity index 89%
rename from src/core/de.evoal.core.main/src/main/java/de/evoal/core/main/statistics/writer/csv/CsvWriter.java
rename to src/core/de.evoal.core.main/src/main/java/de/evoal/core/main/statistics/io/csv/CsvWriter.java
index e303e505..73bdaa73 100644
--- a/src/core/de.evoal.core.main/src/main/java/de/evoal/core/main/statistics/writer/csv/CsvWriter.java
+++ b/src/core/de.evoal.core.main/src/main/java/de/evoal/core/main/statistics/io/csv/CsvWriter.java
@@ -1,9 +1,9 @@
-package de.evoal.core.main.statistics.writer.csv;
+package de.evoal.core.main.statistics.io.csv;
-import de.evoal.core.api.statistics.Column;
-import de.evoal.core.api.statistics.Writer;
-import de.evoal.core.api.statistics.WriterContext;
-import de.evoal.core.api.statistics.WriterException;
+import de.evoal.core.api.statistics.writer.Column;
+import de.evoal.core.api.statistics.io.Writer;
+import de.evoal.core.api.statistics.writer.WriterContext;
+import de.evoal.core.api.statistics.io.WriterException;
import lombok.extern.slf4j.Slf4j;
import org.apache.commons.csv.CSVFormat;
import org.apache.commons.csv.CSVPrinter;
diff --git a/src/core/de.evoal.core.main/src/main/java/de/evoal/core/main/statistics/nop/NopStatistics.java b/src/core/de.evoal.core.main/src/main/java/de/evoal/core/main/statistics/nop/NopStatistics.java
index 195ae316..18c1b254 100644
--- a/src/core/de.evoal.core.main/src/main/java/de/evoal/core/main/statistics/nop/NopStatistics.java
+++ b/src/core/de.evoal.core.main/src/main/java/de/evoal/core/main/statistics/nop/NopStatistics.java
@@ -1,9 +1,8 @@
package de.evoal.core.main.statistics.nop;
-import de.evoal.core.api.ea.fitness.comparator.FitnessValue;
+import de.evoal.core.api.statistics.IterationResult;
import de.evoal.languages.model.instance.Instance;
-import de.evoal.core.api.statistics.StatisticsWriter;
-import io.jenetics.engine.EvolutionResult;
+import de.evoal.core.api.statistics.writer.StatisticsWriter;
import javax.enterprise.context.Dependent;
@@ -13,7 +12,7 @@ import javax.inject.Named;
@Dependent
public class NopStatistics implements StatisticsWriter {
@Override
- public void add(final EvolutionResult<?, FitnessValue> evolutionResult) {
+ public void add(final IterationResult evolutionResult) {
}
@Override
diff --git a/src/core/de.evoal.core.main/src/main/java/module-info.java b/src/core/de.evoal.core.main/src/main/java/module-info.java
index bd1fbec6..b422e6e8 100644
--- a/src/core/de.evoal.core.main/src/main/java/module-info.java
+++ b/src/core/de.evoal.core.main/src/main/java/module-info.java
@@ -16,13 +16,7 @@ module de.evoal.core.main {
requires jul.to.slf4j;
requires ch.qos.logback.classic;
- requires io.jenetics.base;
- requires io.jenetics.ext;
- requires commons.math3;
requires commons.csv;
- requires smile.math;
-
- requires decimal4j;
requires com.fasterxml.jackson.databind;
@@ -41,66 +35,41 @@ module de.evoal.core.main {
requires de.evoal.languages.model.instance;
requires de.evoal.languages.model.utils;
requires com.google.guice;
+ requires commons.math3;
exports de.evoal.core.api.board;
exports de.evoal.core.api.cdi;
- exports de.evoal.core.api.ea.codec;
- exports de.evoal.core.api.ea.constraints.model;
- exports de.evoal.core.api.ea.constraints.strategies;
- exports de.evoal.core.api.ea.constraints.calculation;
- exports de.evoal.core.api.ea.constraints.strategies.fitness;
- exports de.evoal.core.api.ea.correlations;
- exports de.evoal.core.api.ea.fitness;
- exports de.evoal.core.api.ea.fitness.comparator;
- exports de.evoal.core.api.ea.initial;
exports de.evoal.core.api.properties;
exports de.evoal.core.api.properties.info;
exports de.evoal.core.api.properties.io;
exports de.evoal.core.api.properties.stream;
- exports de.evoal.core.api.search;
+ exports de.evoal.core.api.optimisation;
exports de.evoal.core.api.statistics;
+ exports de.evoal.core.api.statistics.io;
+ exports de.evoal.core.api.statistics.writer;
exports de.evoal.core.api.utils;
opens de.evoal.core.api.board to weld.core.impl;
opens de.evoal.core.api.cdi to weld.core.impl;
- opens de.evoal.core.api.ea to weld.core.impl;
- opens de.evoal.core.api.ea.constraints to weld.core.impl;
- opens de.evoal.core.api.ea.constraints.model to weld.core.impl;
- opens de.evoal.core.api.ea.constraints.strategies.fitness to weld.core.impl;
- opens de.evoal.core.api.ea.fitness to weld.core.impl;
+ opens de.evoal.core.api.optimisation to weld.core.impl;
opens de.evoal.core.api.properties to weld.core.impl;
+ opens de.evoal.core.api.properties.info to weld.core.impl;
opens de.evoal.core.api.properties.io to weld.core.impl;
opens de.evoal.core.api.properties.stream to weld.core.impl;
opens de.evoal.core.api.statistics to weld.core.impl;
opens de.evoal.core.api.utils to weld.core.impl;
- opens de.evoal.core.main.ea.alterer to weld.core.impl;
- opens de.evoal.core.main.ea.alterer.mutator to weld.core.impl;
- opens de.evoal.core.main.ea.codec to weld.core.impl;
- opens de.evoal.core.main.ea.codec.chromosome to weld.core.impl;
- opens de.evoal.core.main.ea.comparator to weld.core.impl;
- opens de.evoal.core.main.ea.constraints.deviation to weld.core.impl;
- opens de.evoal.core.main.ea.constraints.constraint to weld.core.impl;
- opens de.evoal.core.main.ea.constraints.constraint.strategies.calculations to weld.core.impl;
- opens de.evoal.core.main.ea.constraints.constraint.strategies.constraint to weld.core.impl;
- opens de.evoal.core.main.ea.constraints.constraint.strategies.fitness to weld.core.impl;
- opens de.evoal.core.main.ea.constraints.correlation to weld.core.impl;
- opens de.evoal.core.main.ea.fitness to weld.core.impl;
- opens de.evoal.core.main.ea.initial to weld.core.impl;
- opens de.evoal.core.main.ea.producer to weld.core.impl;
+ opens de.evoal.core.main.comparator to weld.core.impl;
opens de.evoal.core.main.producer to weld.core.impl;
+ opens de.evoal.core.main.properties to weld.core.impl;
opens de.evoal.core.main.search to weld.core.impl;
opens de.evoal.core.main.statistics to weld.core.impl;
opens de.evoal.core.main.statistics.fitness to weld.core.impl;
opens de.evoal.core.main.statistics.individuals to weld.core.impl;
opens de.evoal.core.main.statistics.nop to weld.core.impl;
- opens de.evoal.core.main.statistics.writer.csv to weld.core.impl;
- opens de.evoal.core.api.ea.correlations to weld.core.impl;
- opens de.evoal.core.api.ea.constraints.calculation to weld.core.impl;
- opens de.evoal.core.api.properties.info to weld.core.impl;
- opens de.evoal.core.api.ea.constraints.strategies to weld.core.impl;
- opens de.evoal.core.main.properties to weld.core.impl;
- opens de.evoal.core.main.ea.search to weld.core.impl;
+ opens de.evoal.core.main.statistics.io.csv to weld.core.impl;
+ opens de.evoal.core.api.statistics.io to weld.core.impl;
+ opens de.evoal.core.api.statistics.writer to weld.core.impl;
- provides de.evoal.languages.model.utils.builtin.BuiltinProvider with de.evoal.core.main.language.ModuleBuiltinProvider;
+ //provides de.evoal.languages.model.utils.builtin.BuiltinProvider with ModuleBuiltinProvider;
}
diff --git a/src/core/de.evoal.core.main/src/main/resources/META-INF/definitions/data/constraints.dl b/src/core/de.evoal.core.main/src/main/resources/META-INF/definitions/data/constraints.dl
new file mode 100644
index 00000000..1ba8690e
--- /dev/null
+++ b/src/core/de.evoal.core.main/src/main/resources/META-INF/definitions/data/constraints.dl
@@ -0,0 +1,13 @@
+/**
+ * Sets the variance of some data.
+ *
+ * <b>Parameters:</b>
+ * <ol>
+ * <li>Reference to the data ...</li>
+ * </ol>
+ */
+def void variance(data reference, float variance);
+
+def void connection(data ref1, data ref2, float connection);
+
+def void constraint(expression exp, string category);
diff --git a/src/core/de.evoal.core.main/src/main/resources/META-INF/definitions/optimisation/core.dl b/src/core/de.evoal.core.main/src/main/resources/META-INF/definitions/optimisation/core.dl
index 501c2516..91189620 100644
--- a/src/core/de.evoal.core.main/src/main/resources/META-INF/definitions/optimisation/core.dl
+++ b/src/core/de.evoal.core.main/src/main/resources/META-INF/definitions/optimisation/core.dl
@@ -18,17 +18,18 @@ type configuration {
statistics : instance statistics;
}
-type algorithm {
- number_of_generations : int;
- size_of_population : int;
- maximum_age : int;
+abstract type algorithm {}
+
+type 'evolutionary-algorithm' extends 'algorithm' {
+ 'number-of-generations' : int;
+ 'size-of-population' : int;
+ 'maximum-age' : int;
maximize : boolean;
-
+
genotype : array instance chromosome;
- initialization : instance random | training;
- encoding : instance encoding;
- constraint_handling : instance constraint_handling;
+ initialization : instance 'initial-population';
+ handlers : array instance 'handler';
selectors : instance selectors;
alterers : instance alterers;
@@ -54,10 +55,8 @@ type 'double-chromosome' extends chromosome {
type 'integer-chromosome' extends chromosome {
}
-
type gene { content : data; }
-
abstract type comparator {}
type 'weighted-sum' extends comparator {
@@ -80,13 +79,15 @@ abstract type 'decorated-fitness-function' extends 'fitness-function' {
* Fitness function we are calling during the fitness calculation.
*/
function : instance 'fitness-function';
-
+}
+
+type 'malus' extends 'decorated-fitness-function' {
}
/**
* Fitness function that calculates the difference between a fitness value and a
* target value to optimize to:<br/>
- *
+ *
* <mathml>
* <math>
* <mrow>
@@ -137,7 +138,7 @@ abstract type 'goal-function' extends 'fitness-function' {
/**
* Calculating fitness value by using a surrogate function:<br/>
- *
+ *
* <mathml>
* <math>
* <mrow>
@@ -172,7 +173,7 @@ type surrogate extends 'goal-function' {
/**
* Calculating fitness value by using a known function:<br/>
- *
+ *
* <mathml>
* <math>
* <mrow>
@@ -202,63 +203,32 @@ type surrogate extends 'goal-function' {
type normal extends 'fitness-function' {
}
-type adjusted extends 'decorated-fitness-function' {
-}
-
-type 'adjusted-modified' extends 'decorated-fitness-function' {
-}
+abstract type 'initial-population' {}
-type density extends 'decorated-fitness-function' {
- exponent : float;
- root_exponent : float;
-
- kind : string;
+type 'random-population' extends 'initial-population' {
}
-type density2 extends 'decorated-fitness-function' {
- exponent : float;
- root_exponent : float;
-
- kind : string;
-}
-
-type training {
-}
-
-type random {
-}
-
-abstract type encoding {}
-
-type double_to_properties extends encoding {
- bounded_operations : boolean;
-}
-
-type bit_to_properties extends encoding {
- bounded_operations : boolean;
-}
+abstract type handler {}
-type gray_bit_to_properties extends encoding {
- bounded_operations : boolean;
+type 'constraint-handler' extends handler {
+ category : string;
+ calculation : instance normal | 'standard-deviation';
+ 'constraint-handling' : instance 'kill-at-birth' | 'malus-for-fitness';
}
-type constraint_handling {
- unnamed : instance handling;
+type 'standard-deviation' {
+ factor : float;
}
-type handling {
- calculation : instance normal | standard_deviation;
- handling : instance kill_at_birth | malus_for_fitness;
+type 'kill-at-birth' {
+ 'repair-strategy' : instance 'repair-strategy';
}
-type standard_deviation {
- factor : float;
-}
+abstract type 'repair-strategy' {}
-type kill_at_birth {
-}
+type 'repair-with-random' extends 'repair-strategy' {}
-type malus_for_fitness {
+type 'malus-for-fitness' {
smoothing : float;
}
@@ -270,37 +240,37 @@ type selectors {
abstract type selector {
}
-type elite_selector extends selector {
- count : int;
- nonEliteSelector : instance selector;
+type 'elite-selector' extends selector {
+ 'size-factor' : float;
+ 'non-elite-selector' : instance selector;
}
-type boltzmann_selector extends selector {
+type 'boltzmann-selector' extends selector {
beta : float;
}
-type exponential_rank_selector extends selector {
+type 'exponential-rank-selector' extends selector {
}
-type linear_rank_selector extends selector {
+type 'linear-rank-selector' extends selector {
nminus : int;
}
-type monte_carlo_selector extends selector {
+type 'monte-carlo-selector' extends selector {
}
-type probability_selector extends selector {
+type 'probability-selector' extends selector {
}
-type stochastic_universal_selector extends selector {
+type 'stochastic-universal-selector' extends selector {
}
-type tournament_selector extends selector {
- size : int;
+type 'tournament-selector' extends selector {
+ 'size-factor' : float;
}
-type truncation_selector extends selector {
- worst_rank : int;
+type 'truncation-selector' extends selector {
+ 'worst-rank' : int;
}
type alterers {
@@ -310,109 +280,101 @@ type alterers {
abstract type crossover {}
-type mean_alterer extends crossover {
+type 'mean-alterer' extends crossover {
probability : float;
}
-type correlation_mean_alterer extends crossover {
+type 'correlation-mean-alterer' extends crossover {
probability : float;
}
-type partial_matched_alterer extends crossover {
+type 'partial-matched-alterer' extends crossover {
probability : float;
}
-type correlation_partial_matched_alterer extends crossover {
+type 'correlation-partial-matched-alterer' extends crossover {
probability : float;
}
-type line_crossover extends crossover {
+type 'line-crossover' extends crossover {
probability : float;
position : float;
}
-type correlation_line_crossover extends crossover {
+type 'correlation-line-crossover' extends crossover {
probability : float;
position : float;
}
-type multi_point_crossover extends crossover {
+type 'multi-point-crossover' extends crossover {
probability : float;
count : int;
}
-type correlation_multi_point_crossover extends crossover {
+type 'correlation-multi-point-crossover' extends crossover {
probability : float;
count : int;
}
-type single_point_crossover extends crossover {
+type 'single-point-crossover' extends crossover {
probability : float;
}
-type correlation_single_point_crossover extends crossover {
+type 'correlation-single-point-crossover' extends crossover {
probability : float;
}
-type uniform_crossover extends crossover {
- crossover_probability : float;
- swap_probability : float;
+type 'uniform-crossover' extends crossover {
+ 'crossover-probability' : float;
+ 'swap-probability' : float;
}
-type correlation_uniform_crossover extends crossover {
- crossover_probability : float;
- swap_probability : float;
+type 'correlation-uniform-crossover' extends crossover {
+ 'crossover-probability' : float;
+ 'swap-probability' : float;
}
abstract type mutator {
}
-type gaussian_mutator extends mutator {
+type 'gaussian-mutator' extends mutator {
probability : float;
}
-type correlation_gaussian_mutator {
+type 'correlation-gaussian-mutator' extends mutator {
probability : float;
threshold : float;
-}
+}
-type swap_mutator extends mutator {
+type 'swap-mutator' extends mutator {
probability : float;
}
-type correlation_swap_mutator extends mutator {
+type 'correlation-swap-mutator' extends mutator {
probability : float;
threshold : float;
}
-type bit_flip_mutator extends mutator {
+type 'bit-flip-mutator' extends mutator {
probability : float;
-}
+}
-type correlation_bit_flip_mutator extends mutator {
+type 'correlation-bit-flip-mutator' extends mutator {
probability : float;
threshold : float;
-}
-
-type statistics {
- writer : array instance statistics_writer;
}
-abstract type statistics_writer {
+type statistics {
+ writer : array instance 'statistics-writer';
}
-/**
- * Not functional at the moment.
- */
-type approximative extends statistics_writer {
- fitness : array instance 'fitness-function';
-
+abstract type 'statistics-writer' {
}
/**
* Creates a file named '<tt>constraint-statistics.csv</tt>' containing
* information on each generation and constraint violations:
- *
+ *
* <ul>
* <li>generation</li>
* <li>for each constraint:
@@ -426,37 +388,24 @@ type approximative extends statistics_writer {
* </li>
* </ul>
*/
-type constraint_statistics extends statistics_writer {}
-
-/**
- * Creates a file named '<tt>best-individual-statistics.csv</tt>' containing the
- * following information for the individual with the best fitness result:
- *
- * <ul>
- * <li>generation</li>
- * <li>individual string</li>
- * <li>age of individual</li>
- * <li>???</li>
- * </ul>
- */
-type correlated extends statistics_writer {}
+type 'constraint-statistics' extends 'statistics-writer' {}
/**
* Creates a file named '<tt>fitness-by-individual.csv</tt>' containing for each individual
* of each generation the following information:
- *
+ *
* <ul>
* <li>generation</li>
* <li>index of individual</li>
* <li>fitness value of each predicted value of the individual</li>
* </ul>
*/
-type fitness_per_individual extends statistics_writer {}
+type 'fitness-per-individual' extends 'statistics-writer' {}
/**
* Creates a file named '<tt>individuals.csv</tt>' containing for each individual
* the following information:
- *
+ *
* <ul>
* <li>generation</li>
* <li>index of individual</li>
@@ -465,27 +414,21 @@ type fitness_per_individual extends statistics_writer {}
* <li>each property value of the individual</li>
* </ul>
*/
-type individuals extends statistics_writer {}
+type individuals extends 'statistics-writer' {}
/**
* Does not write any statistics. Can be used to disable statistics output.
*/
-type none extends statistics_writer {}
+type none extends 'statistics-writer' {}
/**
* Creates a file named '<tt>prediction-by-individual.csv</tt>' containing the
* predicted value(s) of each individual for each generation of the EA run:
- *
+ *
* <ul>
* <li>generation</li>
* <li>index of individual</li>
* <li>each predicted value of the individual</li>
* </ul>
*/
-type prediction_per_individual extends statistics_writer {}
-
-/**
- * Creates a file named '<tt'>hypercube-correlation-distances.csv</tt>' with
- * some weird hypercube info.
- */
-type range_correlated extends statistics_writer {}
\ No newline at end of file
+type 'prediction-per-individual' extends 'statistics-writer' {}
diff --git a/src/core/de.evoal.core.main/src/test/java/de/evoal/core/api/utils/LanguageHelperRegressionTest.java b/src/core/de.evoal.core.main/src/test/java/de/evoal/core/api/utils/LanguageHelperRegressionTest.java
new file mode 100644
index 00000000..85c45e0e
--- /dev/null
+++ b/src/core/de.evoal.core.main/src/test/java/de/evoal/core/api/utils/LanguageHelperRegressionTest.java
@@ -0,0 +1,102 @@
+package de.evoal.core.api.utils;
+
+import de.evoal.core.junit.dsl.LanguageHelper;
+import de.evoal.languages.model.dl.*;
+import de.evoal.languages.model.el.DoubleLiteral;
+import de.evoal.languages.model.generator.Configuration;
+import de.evoal.languages.model.generator.Step;
+import de.evoal.languages.model.instance.*;
+import org.junit.jupiter.api.Assertions;
+import org.junit.jupiter.api.Test;
+
+import java.util.Optional;
+
+public class LanguageHelperRegressionTest {
+ private void assertAttributeTypeOfA(final AttributeDefinition attribute) {
+ Assertions.assertNotNull(attribute);
+ Assertions.assertEquals("a", attribute.getName());
+ Assertions.assertTrue(attribute.getType() instanceof ArrayType);
+ final ArrayType typeA = (ArrayType) attribute.getType();
+ Assertions.assertEquals(1, typeA.getElements().size());
+ Assertions.assertTrue(typeA.getElements().get(0) instanceof FloatType);
+ }
+
+ private void assertAttributeTypeOfC(final AttributeDefinition attribute) {
+ Assertions.assertNotNull(attribute);
+ Assertions.assertTrue(attribute.getType() instanceof ArrayType);
+ final ArrayType typeC = (ArrayType) attribute.getType();
+ Assertions.assertEquals(1, typeC.getElements().size());
+ Assertions.assertTrue(typeC.getElements().get(0) instanceof ArrayType);
+ final ArrayType typetypeC = (ArrayType) typeC.getElements().get(0);
+ Assertions.assertEquals(1, typetypeC.getElements().size());
+ Assertions.assertTrue(typetypeC.getElements().get(0) instanceof FloatType);
+ }
+
+ private void assertAttributeTypeOfM(final AttributeDefinition attribute) {
+ Assertions.assertNotNull(attribute);
+ Assertions.assertTrue(attribute.getType() instanceof FloatType);
+ }
+
+ @Test
+ public void testDefinitionLanguageParser() {
+ final DefinitionModel model = LanguageHelper.loadFromClasspath("de/evoal/core/api/utils/regressions/generator.dl");
+
+ Assertions.assertNotNull(model);
+ Assertions.assertNotNull(model.getTypes());
+ Assertions.assertEquals(1, model.getTypes().size());
+
+ final TypeDefinition type = model.getTypes().get(0);
+ Assertions.assertEquals("shekel", type.getName());
+ Assertions.assertNull(type.getSuperType());
+ Assertions.assertEquals(3, type.getAttributes().size());
+
+ final Optional<AttributeDefinition> attributeA = type.getAttributes().stream().map(AttributeDefinition.class::cast).filter(a -> "a".equals(a.getName())).findFirst();
+ final Optional<AttributeDefinition> attributeC = type.getAttributes().stream().map(AttributeDefinition.class::cast).filter(a -> "c".equals(a.getName())).findFirst();
+ final Optional<AttributeDefinition> attributeM = type.getAttributes().stream().map(AttributeDefinition.class::cast).filter(a -> "m".equals(a.getName())).findFirst();
+
+ assertAttributeTypeOfA(attributeA.get());
+ assertAttributeTypeOfC(attributeC.get());
+ assertAttributeTypeOfM(attributeM.get());
+ }
+
+ @Test
+ public void testLoading() {
+ final Configuration configuration = LanguageHelper.loadFromClasspath("de/evoal/core/api/utils/regressions/shekel.generator");
+
+ // fetch step configuration for testee
+ final Step step = configuration.getPipelines().get(0).getSteps().get(0);
+
+ Assertions.assertNotNull(step);
+ Assertions.assertNotNull(step.getInstance());
+ Assertions.assertEquals(3, step.getInstance().getAttributes().size());
+
+ final Attribute attributeA = step.getInstance().findAttribute("a");
+ final Attribute attributeC = step.getInstance().findAttribute("c");
+ final Attribute attributeM = step.getInstance().findAttribute("m");
+
+ assertAttributeTypeOfA(attributeA.getDefinition());
+ assertAttributeTypeOfC(attributeC.getDefinition());
+ assertAttributeTypeOfM(attributeM.getDefinition());
+
+ {
+ Assertions.assertTrue(attributeA.getValue() instanceof Array);
+ final Array array = (Array)attributeA.getValue();
+ Assertions.assertEquals(10, array.getValues().size());
+ Assertions.assertTrue(array.getValues().get(0) instanceof LiteralValue);
+ final LiteralValue literal = (LiteralValue) array.getValues().get(0);
+ Assertions.assertTrue(literal.getLiteral() instanceof DoubleLiteral);
+ Assertions.assertEquals(1.0, literal.getLiteral().getValue());
+ }
+
+ {
+ Assertions.assertTrue(attributeC.getValue() instanceof Array);
+ final Array array = (Array)attributeC.getValue();
+ Assertions.assertEquals(4, array.getValues().size());
+ Assertions.assertTrue(array.getValues().get(0) instanceof Array);
+ final Array array2 = (Array) array.getValues().get(0);
+ Assertions.assertEquals(10, array2.getValues().size());
+ }
+
+ }
+
+}
diff --git a/src/core/de.evoal.core.main/src/test/java/de/evoal/core/api/utils/LanguageHelperUnitTest.java b/src/core/de.evoal.core.main/src/test/java/de/evoal/core/api/utils/LanguageHelperUnitTest.java
new file mode 100644
index 00000000..896d0452
--- /dev/null
+++ b/src/core/de.evoal.core.main/src/test/java/de/evoal/core/api/utils/LanguageHelperUnitTest.java
@@ -0,0 +1,182 @@
+package de.evoal.core.api.utils;
+
+import de.evoal.languages.model.instance.Instance;
+import de.evoal.languages.model.ol.OptimisationModel;
+import org.junit.jupiter.api.*;
+
+import static de.evoal.core.api.utils.LanguageHelper.*;
+
+public class LanguageHelperUnitTest {
+ @Order(1)
+ @Test
+ public void testLoading() {
+ final OptimisationModel model = de.evoal.core.junit.dsl.LanguageHelper.loadFromClasspath("de/evoal/core/api/utils/LanguageHelperTest.ol");
+ final Instance instance = model.getInstance();
+
+ Assertions.assertNotNull(instance);
+ }
+
+ @Test
+ public void testLookupForNullInstance() {
+ Assertions.assertThrows(IllegalStateException.class, () -> lookup(null, "child"));
+ }
+
+ @Test
+ public void testLookupForNullPath() {
+ final OptimisationModel model = de.evoal.core.junit.dsl.LanguageHelper.loadFromClasspath("de/evoal/core/api/utils/LanguageHelperTest.ol");
+ final Instance instance = model.getInstance();
+
+ Assertions.assertThrows(IllegalArgumentException.class, () -> lookup(instance, null));
+ }
+
+ @Test
+ public void testLookupForEmptyPath() {
+ final OptimisationModel model = de.evoal.core.junit.dsl.LanguageHelper.loadFromClasspath("de/evoal/core/api/utils/LanguageHelperTest.ol");
+ final Instance instance = model.getInstance();
+
+ final Object result = lookup(instance, "");
+
+ Assertions.assertNotNull(result);
+ Assertions.assertTrue(instance == result);
+ }
+
+ @Test
+ public void testLookupForExistingChild() {
+ final OptimisationModel model = de.evoal.core.junit.dsl.LanguageHelper.loadFromClasspath("de/evoal/core/api/utils/LanguageHelperTest.ol");
+ final Instance instance = model.getInstance();
+
+ final Object result = lookup(instance, "child");
+
+ Assertions.assertNotNull(result);
+ Assertions.assertTrue(result instanceof Instance);
+
+ final Instance child = (Instance)result;
+ Assertions.assertEquals("A", child.getDefinition().getName());
+ }
+
+ @Test
+ public void testLookupName() {
+ final OptimisationModel model = de.evoal.core.junit.dsl.LanguageHelper.loadFromClasspath("de/evoal/core/api/utils/LanguageHelperTest.ol");
+ final Instance instance = model.getInstance();
+
+ final Object result = lookup(instance, "name");
+
+ Assertions.assertNotNull(result);
+ Assertions.assertEquals("parent", result);
+ }
+
+ @Test
+ public void testLookupChildOfLiteral() {
+ final OptimisationModel model = de.evoal.core.junit.dsl.LanguageHelper.loadFromClasspath("de/evoal/core/api/utils/LanguageHelperTest.ol");
+ final Instance instance = model.getInstance();
+
+ Assertions.assertThrows(IllegalStateException.class, () -> lookup(instance, "child.string-field.non-existing"));
+ }
+
+ @Test
+ public void testLookupNonExistingChild() {
+ final OptimisationModel model = de.evoal.core.junit.dsl.LanguageHelper.loadFromClasspath("de/evoal/core/api/utils/LanguageHelperTest.ol");
+ final Instance instance = model.getInstance();
+
+ Assertions.assertThrows(IllegalStateException.class, () -> lookup(instance, "child.non-existing"));
+ }
+
+ @Test
+ public void testLookupBooleanField() {
+ final OptimisationModel model = de.evoal.core.junit.dsl.LanguageHelper.loadFromClasspath("de/evoal/core/api/utils/LanguageHelperTest.ol");
+ final Instance instance = model.getInstance();
+
+ final Object result = lookup(instance, "child.boolean-field");
+
+ Assertions.assertNotNull(result);
+ Assertions.assertTrue(result instanceof Boolean);
+ Assertions.assertEquals(true, result);
+ }
+
+ @Test
+ public void testLookupFlotField() {
+ final OptimisationModel model = de.evoal.core.junit.dsl.LanguageHelper.loadFromClasspath("de/evoal/core/api/utils/LanguageHelperTest.ol");
+ final Instance instance = model.getInstance();
+
+ final Object result = lookup(instance, "child.float-field");
+
+ Assertions.assertNotNull(result);
+ Assertions.assertTrue(result instanceof Double);
+ Assertions.assertEquals(1.3, result);
+ }
+
+ @Test
+ public void testLookupIntegerField() {
+ final OptimisationModel model = de.evoal.core.junit.dsl.LanguageHelper.loadFromClasspath("de/evoal/core/api/utils/LanguageHelperTest.ol");
+ final Instance instance = model.getInstance();
+
+ final Object result = lookup(instance, "child.integer-field");
+
+ Assertions.assertNotNull(result);
+ Assertions.assertTrue(result instanceof Integer);
+ Assertions.assertEquals(4, result);
+ }
+
+ @Test
+ public void testLookupStringField() {
+ final OptimisationModel model = de.evoal.core.junit.dsl.LanguageHelper.loadFromClasspath("de/evoal/core/api/utils/LanguageHelperTest.ol");
+ final Instance instance = model.getInstance();
+
+ final Object result = lookup(instance, "child.string-field");
+
+ Assertions.assertNotNull(result);
+ Assertions.assertTrue(result instanceof String);
+ Assertions.assertEquals("FOOBAR", result);
+ }
+
+ @Test
+ public void testLookup1DArrayField() {
+ final OptimisationModel model = de.evoal.core.junit.dsl.LanguageHelper.loadFromClasspath("de/evoal/core/api/utils/LanguageHelperTest.ol");
+ final Instance instance = model.getInstance();
+
+ final Object result = lookup(instance, "child.array-1D-float");
+
+ Assertions.assertNotNull(result);
+ Assertions.assertTrue(result instanceof Object []);
+
+ final Object [] array = (Object[]) result;
+ Assertions.assertEquals(3, array.length);
+ Assertions.assertEquals(4.2, array[0]);
+ Assertions.assertEquals(3.1, array[1]);
+ Assertions.assertEquals(1.0, array[2]);
+ }
+
+ @Test
+ public void testLookup2DArrayField() {
+ final OptimisationModel model = de.evoal.core.junit.dsl.LanguageHelper.loadFromClasspath("de/evoal/core/api/utils/LanguageHelperTest.ol");
+ final Instance instance = model.getInstance();
+
+ final Object result = lookup(instance, "child.array-2D-int");
+
+ Assertions.assertNotNull(result);
+ Assertions.assertTrue(result instanceof Object []);
+
+ final Object [] array = (Object[]) result;
+ Assertions.assertEquals(3, array.length);
+
+ final Object [] array0 = (Object[]) array[0];
+ final Object [] array1 = (Object[]) array[1];
+ final Object [] array2 = (Object[]) array[2];
+
+ Assertions.assertEquals(5, array0.length);
+ Assertions.assertEquals(3, array1.length);
+ Assertions.assertEquals(1, array2.length);
+
+ Assertions.assertEquals(1, array0[0]);
+ Assertions.assertEquals(2, array0[1]);
+ Assertions.assertEquals(3, array0[2]);
+ Assertions.assertEquals(4, array0[3]);
+ Assertions.assertEquals(5, array0[4]);
+
+ Assertions.assertEquals(3, array1[0]);
+ Assertions.assertEquals(2, array1[1]);
+ Assertions.assertEquals(1, array1[2]);
+
+ Assertions.assertEquals(42, array2[0]);
+ }
+}
diff --git a/src/core/de.evoal.core.main/src/test/resources/de/evoal/core/api/utils/regressions/generator.dl b/src/core/de.evoal.core.main/src/test/resources/de/evoal/core/api/utils/regressions/generator.dl
new file mode 100644
index 00000000..84b046e8
--- /dev/null
+++ b/src/core/de.evoal.core.main/src/test/resources/de/evoal/core/api/utils/regressions/generator.dl
@@ -0,0 +1,25 @@
+/**
+ * Shekel's foxholes.
+ *
+ * https://www.sfu.ca/~ssurjano/shekel.html
+ */
+type 'shekel' {
+ /**
+ * The recommended value for the vector a is (1/m)*{1,2,2,4,4,6,3,7,5,5}.
+ */
+ 'a' : array float;
+
+ /**
+ * The recommended value for the constant c is {
+ * {4.0, 1.0, 8.0, 6.0, 3.0, 2.0, 5.0, 8.0, 6.0, 7.0},
+ * {4.0, 1.0, 8.0, 6.0, 7.0, 9.0, 3.0, 1.0, 2.0, 3.6},
+ * {4.0, 1.0, 8.0, 6.0, 3.0, 2.0, 5.0, 8.0, 6.0, 7.0},
+ * {4.0, 1.0, 8.0, 6.0, 7.0, 9.0, 3.0, 1.0, 2.0, 3.6}}.
+ */
+ 'c' : array array float;
+
+ /**
+ * The recommended value for the constant m is 10.
+ */
+ 'm' : float;
+}
diff --git a/src/core/de.evoal.core.main/src/test/resources/de/evoal/core/api/utils/regressions/shekel.generator b/src/core/de.evoal.core.main/src/test/resources/de/evoal/core/api/utils/regressions/shekel.generator
new file mode 100644
index 00000000..7486510a
--- /dev/null
+++ b/src/core/de.evoal.core.main/src/test/resources/de/evoal/core/api/utils/regressions/shekel.generator
@@ -0,0 +1,20 @@
+use "generator.dl";
+use "test.ddl";
+
+pipeline example [
+ step {
+ component 'shekel' {
+ 'a' := [1.0,2.0,2.0,4.0,4.0,6.0,3.0,7.0,5.0,5.0];
+ 'c' := [
+ [4.0,1.0,8.0,6.0,3.0,2.0,5.0,8.0,6.0,7.0],
+ [4.0,1.0,8.0,6.0,7.0,9.0,3.0,1.0,2.0,3.6],
+ [4.0,1.0,8.0,6.0,3.0,2.0,5.0,8.0,6.0,7.0],
+ [4.0,1.0,8.0,6.0,7.0,9.0,3.0,1.0,2.0,3.6]
+ ];
+ 'm' := 10.0;
+ }
+
+ reads [data 'x:0'];
+ writes [data 'x:1'];
+ }
+]
diff --git a/src/core/de.evoal.core.main/src/test/resources/de/evoal/core/api/utils/regressions/test.ddl b/src/core/de.evoal.core.main/src/test/resources/de/evoal/core/api/utils/regressions/test.ddl
new file mode 100644
index 00000000..0a100d63
--- /dev/null
+++ b/src/core/de.evoal.core.main/src/test/resources/de/evoal/core/api/utils/regressions/test.ddl
@@ -0,0 +1,3 @@
+data:
+ quotient real data 'x:0';
+ quotient real data 'x:1';
\ No newline at end of file
diff --git a/src/core/de.evoal.generator.main/pom.xml b/src/core/de.evoal.generator.main/pom.xml
index 3da6302a..50a1d2f5 100644
--- a/src/core/de.evoal.generator.main/pom.xml
+++ b/src/core/de.evoal.generator.main/pom.xml
@@ -7,6 +7,7 @@
<groupId>de.evoal</groupId>
<artifactId>core.plugin</artifactId>
<version>0.9.0-SNAPSHOT</version>
+ <relativePath>../de.evoal.core.plugin</relativePath>
</parent>
<artifactId>generator.main</artifactId>
diff --git a/src/core/de.evoal.generator.main/src/main/resources/META-INF/specifications/generator/main.dl b/src/core/de.evoal.generator.main/src/main/resources/META-INF/definitions/generator/main.dl
similarity index 95%
rename from src/core/de.evoal.generator.main/src/main/resources/META-INF/specifications/generator/main.dl
rename to src/core/de.evoal.generator.main/src/main/resources/META-INF/definitions/generator/main.dl
index b6d41817..bd4485c1 100644
--- a/src/core/de.evoal.generator.main/src/main/resources/META-INF/specifications/generator/main.dl
+++ b/src/core/de.evoal.generator.main/src/main/resources/META-INF/definitions/generator/main.dl
@@ -1,6 +1,6 @@
/**
- * In mathematical optimization, the Ackley function is a non-convex function
- * used as a performance test problem for optimization algorithms. It was proposed
+ * In mathematical optimisation, the Ackley function is a non-convex function
+ * used as a performance test problem for optimisation algorithms. It was proposed
* by David Ackley in his 1987 PhD dissertation. ... <a href="https://en.wikipedia.org/wiki/Ackley_function">Wikipedia</a>.
*
* <math display="block">
@@ -121,8 +121,8 @@ type ackley {
}
/**
- * In mathematical optimization, the Rastrigin function is a non-convex function
- * used as a performance test problem for optimization algorithms. ... <a href="https://en.wikipedia.org/wiki/Rastrigin_function">Wikipedia</a>
+ * In mathematical optimisation, the Rastrigin function is a non-convex function
+ * used as a performance test problem for optimisation algorithms. ... <a href="https://en.wikipedia.org/wiki/Rastrigin_function">Wikipedia</a>
*
* <math display="block">
* <mrow>
diff --git a/src/core/de.evoal.releng.parent/pom.xml b/src/core/de.evoal.releng.parent/pom.xml
index ccedc18f..623d5c0d 100644
--- a/src/core/de.evoal.releng.parent/pom.xml
+++ b/src/core/de.evoal.releng.parent/pom.xml
@@ -29,6 +29,7 @@
<module>../de.evoal.core.main</module>
<module>../de.evoal.core.plugin</module>
+ <module>../de.evoal.core.ea</module>
<module>../de.evoal.core.arff</module>
<module>../de.evoal.core.junit</module>
@@ -266,6 +267,7 @@
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-source-plugin</artifactId>
+ <version>3.2.1</version>
<executions>
<execution>
<id>attach-sources</id>
diff --git a/src/core/de.evoal.surrogate.api/pom.xml b/src/core/de.evoal.surrogate.api/pom.xml
index 7dcf280c..878b1581 100644
--- a/src/core/de.evoal.surrogate.api/pom.xml
+++ b/src/core/de.evoal.surrogate.api/pom.xml
@@ -7,8 +7,24 @@
<groupId>de.evoal</groupId>
<artifactId>core.plugin</artifactId>
<version>0.9.0-SNAPSHOT</version>
+ <relativePath>../de.evoal.core.plugin</relativePath>
</parent>
<artifactId>surrogate.api</artifactId>
<name>EvoAl - Surrogate - API</name>
+
+ <dependencies>
+ <dependency>
+ <groupId>${project.groupId}</groupId>
+ <artifactId>core.ea</artifactId>
+ <version>${project.version}</version>
+ <scope>provided</scope>
+ </dependency>
+ <dependency>
+ <groupId>de.evoal</groupId>
+ <artifactId>core.ea</artifactId>
+ <version>0.9.0-SNAPSHOT</version>
+ <scope>compile</scope>
+ </dependency>
+ </dependencies>
</project>
diff --git a/src/core/de.evoal.surrogate.api/src/main/java/de/evoal/surrogate/api/function/SurrogateFunction.java b/src/core/de.evoal.surrogate.api/src/main/java/de/evoal/surrogate/api/function/SurrogateFunction.java
index 6f43da87..f5bbbd55 100644
--- a/src/core/de.evoal.surrogate.api/src/main/java/de/evoal/surrogate/api/function/SurrogateFunction.java
+++ b/src/core/de.evoal.surrogate.api/src/main/java/de/evoal/surrogate/api/function/SurrogateFunction.java
@@ -9,7 +9,7 @@ import lombok.NonNull;
import java.util.List;
/**
- * A surrogate function replaces the actual function used in the optimization
+ * A surrogate function replaces the actual function used in the optimisation
* if the actual function is too expensive to calculate or even unknown. A
* surrogate function transforms input properties into output properties
* according to a known oder learned function.
diff --git a/src/core/de.evoal.surrogate.api/src/main/java/de/evoal/surrogate/main/ea/SurrogateFitnessFunction.java b/src/core/de.evoal.surrogate.api/src/main/java/de/evoal/surrogate/main/ea/SurrogateFitnessFunction.java
index 84f3c083..f820ef82 100644
--- a/src/core/de.evoal.surrogate.api/src/main/java/de/evoal/surrogate/main/ea/SurrogateFitnessFunction.java
+++ b/src/core/de.evoal.surrogate.api/src/main/java/de/evoal/surrogate/main/ea/SurrogateFitnessFunction.java
@@ -1,8 +1,7 @@
package de.evoal.surrogate.main.ea;
-import de.evoal.core.api.ea.fitness.FitnessFunction;
+import de.evoal.core.api.optimisation.OptimisationFunction;
import de.evoal.core.api.properties.Properties;
-import de.evoal.core.api.properties.PropertiesSpecification;
import de.evoal.languages.model.instance.Instance;
import de.evoal.surrogate.api.function.SurrogateFunction;
@@ -12,7 +11,7 @@ import javax.inject.Named;
@Dependent
@Named("surrogate")
-public class SurrogateFitnessFunction implements FitnessFunction {
+public class SurrogateFitnessFunction implements OptimisationFunction {
@Inject
private SurrogateFunction function;
@@ -23,7 +22,7 @@ public class SurrogateFitnessFunction implements FitnessFunction {
}
@Override
- public FitnessFunction init(final Instance config) {
+ public OptimisationFunction init(final Instance config) {
return this;
}
}
diff --git a/src/core/de.evoal.surrogate.api/src/main/java/de/evoal/surrogate/main/ea/TrainingInitialPopulation.java b/src/core/de.evoal.surrogate.api/src/main/java/de/evoal/surrogate/main/ea/TrainingInitialPopulation.java
index 2064686e..4e44046d 100644
--- a/src/core/de.evoal.surrogate.api/src/main/java/de/evoal/surrogate/main/ea/TrainingInitialPopulation.java
+++ b/src/core/de.evoal.surrogate.api/src/main/java/de/evoal/surrogate/main/ea/TrainingInitialPopulation.java
@@ -3,12 +3,12 @@ package de.evoal.surrogate.main.ea;
import de.evoal.core.api.board.Blackboard;
import de.evoal.core.api.board.CoreBlackboardEntries;
import de.evoal.core.api.cdi.ConfigurationValue;
-import de.evoal.core.api.ea.codec.CustomCodec;
-import de.evoal.core.api.ea.initial.InitialPopulation;
import de.evoal.core.api.properties.Properties;
import de.evoal.core.api.properties.PropertiesSpecification;
import de.evoal.core.api.properties.stream.FileBasedPropertiesStreamSupplier;
import de.evoal.core.api.properties.stream.PropertiesStreamSupplier;
+import de.evoal.core.ea.api.codec.CustomCodec;
+import de.evoal.core.ea.api.initial.InitialPopulation;
import de.evoal.languages.model.instance.Instance;
import de.evoal.surrogate.api.SurrogateBlackboardEntries;
import io.jenetics.Gene;
diff --git a/src/core/de.evoal.surrogate.api/src/main/java/de/evoal/surrogate/main/ea/TrainingProducer.java b/src/core/de.evoal.surrogate.api/src/main/java/de/evoal/surrogate/main/ea/TrainingProducer.java
index cbbbdef6..a0f03db9 100644
--- a/src/core/de.evoal.surrogate.api/src/main/java/de/evoal/surrogate/main/ea/TrainingProducer.java
+++ b/src/core/de.evoal.surrogate.api/src/main/java/de/evoal/surrogate/main/ea/TrainingProducer.java
@@ -3,9 +3,9 @@ package de.evoal.surrogate.main.ea;
import de.evoal.core.api.board.CoreBlackboardEntries;
import de.evoal.core.api.cdi.BeanFactory;
import de.evoal.core.api.cdi.ConfigurationValue;
-import de.evoal.core.api.ea.initial.InitialPopulation;
+import de.evoal.core.ea.api.constraints.strategies.RepairStrategy;
+import de.evoal.core.ea.api.initial.InitialPopulation;
import de.evoal.languages.model.instance.Instance;
-import de.evoal.core.api.ea.constraints.strategies.RepairStrategy;
import javax.enterprise.context.ApplicationScoped;
import javax.enterprise.context.Dependent;
@@ -21,7 +21,7 @@ public class TrainingProducer {
@Produces
@Dependent
@Named("training")
- public InitialPopulation create(@ConfigurationValue(entry = CoreBlackboardEntries.OPTIMISATION_CONFIGURATION, access = "algorithm.initialization") Instance initialization) {
+ public InitialPopulation create(@ConfigurationValue(entry = CoreBlackboardEntries.OPTIMISATION_CONFIGURATION, access = "algorithm.initialisation") Instance initialization) {
final TrainingInitialPopulation population = new TrainingInitialPopulation();
BeanFactory.injectFields(population);
population.init();
diff --git a/src/core/de.evoal.surrogate.api/src/main/java/de/evoal/surrogate/main/ea/TrainingRepairStrategy.java b/src/core/de.evoal.surrogate.api/src/main/java/de/evoal/surrogate/main/ea/TrainingRepairStrategy.java
index 545eab0a..b2f005aa 100644
--- a/src/core/de.evoal.surrogate.api/src/main/java/de/evoal/surrogate/main/ea/TrainingRepairStrategy.java
+++ b/src/core/de.evoal.surrogate.api/src/main/java/de/evoal/surrogate/main/ea/TrainingRepairStrategy.java
@@ -1,12 +1,12 @@
package de.evoal.surrogate.main.ea;
import de.evoal.core.api.board.Blackboard;
-import de.evoal.core.api.ea.codec.CustomCodec;
-import de.evoal.core.api.ea.constraints.strategies.RepairStrategy;
import de.evoal.core.api.properties.Properties;
import de.evoal.core.api.properties.PropertiesSpecification;
import de.evoal.core.api.properties.stream.FileBasedPropertiesStreamSupplier;
import de.evoal.core.api.properties.stream.PropertiesStreamSupplier;
+import de.evoal.core.ea.api.codec.CustomCodec;
+import de.evoal.core.ea.api.constraints.strategies.RepairStrategy;
import de.evoal.languages.model.instance.Instance;
import de.evoal.surrogate.api.SurrogateBlackboardEntries;
import io.jenetics.Gene;
diff --git a/src/core/de.evoal.surrogate.api/src/main/java/de/evoal/surrogate/main/gof/rmse/RMSECalculator.java b/src/core/de.evoal.surrogate.api/src/main/java/de/evoal/surrogate/main/gof/rmse/RMSECalculator.java
index 420d6063..d99fe097 100644
--- a/src/core/de.evoal.surrogate.api/src/main/java/de/evoal/surrogate/main/gof/rmse/RMSECalculator.java
+++ b/src/core/de.evoal.surrogate.api/src/main/java/de/evoal/surrogate/main/gof/rmse/RMSECalculator.java
@@ -41,7 +41,7 @@ public class RMSECalculator implements SurrogateInformationCalculator {
private SurrogateFunction function;
/**
- * Supplier for the trainings data.
+ * Supplier for the training data.
*/
private PropertiesStreamSupplier trainingData;
diff --git a/src/core/de.evoal.surrogate.api/src/main/java/de/evoal/surrogate/main/gof/rmse/RRSECalculator.java b/src/core/de.evoal.surrogate.api/src/main/java/de/evoal/surrogate/main/gof/rmse/RRSECalculator.java
index 9df7d648..aba0ded2 100644
--- a/src/core/de.evoal.surrogate.api/src/main/java/de/evoal/surrogate/main/gof/rmse/RRSECalculator.java
+++ b/src/core/de.evoal.surrogate.api/src/main/java/de/evoal/surrogate/main/gof/rmse/RRSECalculator.java
@@ -35,7 +35,7 @@ public class RRSECalculator implements SurrogateInformationCalculator {
private SurrogateFunction function;
/**
- * Supplier for the trainings data.
+ * Supplier for the training data.
*/
private PropertiesStreamSupplier trainingData;
@@ -58,7 +58,6 @@ public class RRSECalculator implements SurrogateInformationCalculator {
final Properties actual = function.apply(source);
for(int i = 0; i < expected.size(); ++i) {
- System.err.println(" " + expected.getAsDouble(i) + " -- " + actual.getAsDouble(i));
data.get(i).add(Math.pow((expected.getAsDouble(i) - actual.getAsDouble(i)) / expected.getAsDouble(i), 2.0));
}
});
diff --git a/src/core/de.evoal.surrogate.api/src/main/java/de/evoal/surrogate/main/statistics/constraint/ConstraintStatistics.java b/src/core/de.evoal.surrogate.api/src/main/java/de/evoal/surrogate/main/statistics/constraint/ConstraintStatistics.java
index cc8621a0..e0d7afff 100644
--- a/src/core/de.evoal.surrogate.api/src/main/java/de/evoal/surrogate/main/statistics/constraint/ConstraintStatistics.java
+++ b/src/core/de.evoal.surrogate.api/src/main/java/de/evoal/surrogate/main/statistics/constraint/ConstraintStatistics.java
@@ -1,18 +1,18 @@
package de.evoal.surrogate.main.statistics.constraint;
-import de.evoal.core.api.ea.constraints.calculation.CalculationFactory;
-import de.evoal.core.api.ea.constraints.calculation.CalculationStrategy;
-import de.evoal.core.api.ea.fitness.comparator.FitnessValue;
import de.evoal.core.api.statistics.*;
+import de.evoal.core.api.statistics.io.Writer;
+import de.evoal.core.api.statistics.io.WriterException;
+import de.evoal.core.api.statistics.io.WriterStrategy;
+import de.evoal.core.api.statistics.writer.Column;
+import de.evoal.core.api.statistics.writer.ColumnType;
+import de.evoal.core.api.statistics.writer.StatisticsWriter;
+import de.evoal.core.ea.api.constraints.calculation.CalculationFactory;
+import de.evoal.core.ea.api.constraints.calculation.CalculationStrategy;
+import de.evoal.core.ea.api.constraints.model.ConstraintResult;
+import de.evoal.core.ea.api.constraints.model.Constraints;
+import de.evoal.core.ea.api.constraints.strategies.CalculationResult;
import de.evoal.languages.model.instance.Instance;
-import de.evoal.core.api.ea.codec.CustomCodec;
-import de.evoal.core.api.ea.constraints.model.ConstraintResult;
-import de.evoal.core.api.ea.constraints.model.Constraints;
-import de.evoal.core.api.ea.constraints.strategies.CalculationResult;
-import de.evoal.core.api.properties.Properties;
-import io.jenetics.Phenotype;
-import io.jenetics.engine.EvolutionResult;
-import io.jenetics.util.ISeq;
import javax.annotation.PostConstruct;
import javax.enterprise.context.Dependent;
import lombok.SneakyThrows;
@@ -24,6 +24,7 @@ import java.util.ArrayList;
import java.util.DoubleSummaryStatistics;
import java.util.List;
import java.util.stream.Collectors;
+import java.util.stream.Stream;
/**
* Small helper class for collecting and writing the generation-based statistics.
@@ -42,15 +43,8 @@ public class ConstraintStatistics implements StatisticsWriter {
@Inject
private Constraints constraints;
- @Inject
- private CustomCodec codec;
-
private CalculationStrategy[] calculators;
- private long endTime;
-
- private long startTime;
-
@Inject
private WriterStrategy strategy;
@@ -58,8 +52,6 @@ public class ConstraintStatistics implements StatisticsWriter {
@PostConstruct @SneakyThrows(WriterException.class)
private void init() {
- startTime = System.currentTimeMillis();
-
createColumns();
writer = strategy.create("constraint-statistics", columns);
@@ -82,7 +74,7 @@ public class ConstraintStatistics implements StatisticsWriter {
}
}
- private Object[] toData(final long generation, final ISeq<Phenotype<?, FitnessValue>> population) {
+ private Object[] toData(final int generation, final Stream<Candidate> candidates) {
final Object [] data = new Object[1 + constraints.getConstraints().size() * NUMBER_OF_STATISTICS_PER_CONSTRAINT];
data[0] = generation;
@@ -91,10 +83,9 @@ public class ConstraintStatistics implements StatisticsWriter {
final CalculationStrategy strategy = calculators[index];
final List<CalculationResult> calculationResults =
- population.stream()
- .map(Phenotype::genotype)
- .map(g -> (Properties)codec.decode(g))
- // TODO .map(strategy::calculate)
+ candidates
+ .map(Candidate::searchSpaceRepresentation)
+// TODO .map(strategy::calculate)
.map(CalculationResult.class::cast)
.collect(Collectors.toList());
@@ -121,11 +112,14 @@ public class ConstraintStatistics implements StatisticsWriter {
return data;
}
- @SneakyThrows(WriterException.class)
- public void add(final EvolutionResult<?, FitnessValue> evolutionResult) {
- final ISeq<Phenotype<?, FitnessValue>> population = (ISeq<Phenotype<?, FitnessValue>>)(Object)evolutionResult.population();
-
- writer.addRecord(toData(evolutionResult.generation(), population));
+ @Override
+ public void add(final IterationResult result) {
+ try {
+ final Object [] data = toData(result.iteration(), result.candidates());
+ writer.addRecord(data);
+ } catch (final WriterException e) {
+ log.error("Failed to add record.", e);
+ }
}
@Override
@@ -133,8 +127,8 @@ public class ConstraintStatistics implements StatisticsWriter {
return this;
}
+ @Override
public void write() {
- endTime = System.currentTimeMillis();
try {
strategy.close(writer);
} catch (final WriterException e) {
diff --git a/src/core/de.evoal.surrogate.api/src/main/java/de/evoal/surrogate/main/statistics/correlated/GenerationStatisticsWriter.java b/src/core/de.evoal.surrogate.api/src/main/java/de/evoal/surrogate/main/statistics/correlated/GenerationStatisticsWriter.java
index c141bda6..f5ab9a93 100644
--- a/src/core/de.evoal.surrogate.api/src/main/java/de/evoal/surrogate/main/statistics/correlated/GenerationStatisticsWriter.java
+++ b/src/core/de.evoal.surrogate.api/src/main/java/de/evoal/surrogate/main/statistics/correlated/GenerationStatisticsWriter.java
@@ -2,17 +2,19 @@ package de.evoal.surrogate.main.statistics.correlated;
import de.evoal.core.api.board.CoreBlackboardEntries;
import de.evoal.core.api.cdi.ConfigurationValue;
+import de.evoal.core.api.optimisation.OptimisationValue;
import de.evoal.core.api.statistics.*;
+import de.evoal.core.api.statistics.io.Writer;
+import de.evoal.core.api.statistics.io.WriterException;
+import de.evoal.core.api.statistics.io.WriterStrategy;
+import de.evoal.core.api.statistics.writer.Column;
+import de.evoal.core.api.statistics.writer.ColumnType;
+import de.evoal.core.api.statistics.writer.StatisticsWriter;
import de.evoal.core.api.utils.LanguageHelper;
import de.evoal.languages.model.instance.Instance;
-import de.evoal.core.api.ea.fitness.comparator.FitnessValue;
-import de.evoal.core.api.ea.codec.CustomCodec;
import de.evoal.core.api.properties.Properties;
import de.evoal.core.api.properties.PropertiesSpecification;
import de.evoal.surrogate.api.training.TrainingDataManager;
-import io.jenetics.Genotype;
-import io.jenetics.engine.EvolutionResult;
-import io.jenetics.util.ISeq;
import javax.annotation.PostConstruct;
import javax.enterprise.context.Dependent;
import lombok.extern.slf4j.Slf4j;
@@ -25,6 +27,7 @@ import javax.inject.Provider;
import java.util.ArrayList;
import java.util.Arrays;
import java.util.List;
+import java.util.Optional;
import java.util.function.Function;
import java.util.stream.Collectors;
@@ -46,15 +49,10 @@ public class GenerationStatisticsWriter implements StatisticsWriter {
// TODO @Inject @Named("function-names")
private List<String> functionNames;
- /**
- * Encoding for converting between ea and domain.
- */
- @Inject
- private CustomCodec encoding;
private long startTime;
- private EvolutionResult<?, FitnessValue> generationWithBestIndividual;
+ private IterationResult generationWithBestIndividual;
private long endTime;
@Inject
@@ -169,16 +167,17 @@ public class GenerationStatisticsWriter implements StatisticsWriter {
}
private Matrix createBestGenerationMatrix() {
- final ISeq<Genotype<?>> genotypes = (ISeq<Genotype<?>>)(Object)generationWithBestIndividual.genotypes();
+ final List<Candidate> candidates = generationWithBestIndividual.candidates().collect(Collectors.toList());
final int dimensions = sourceSpec.size();
- final int size = genotypes.size();
+ final Optional<Integer> optSize = generationWithBestIndividual.candidateCount();
+ final int size = optSize.orElse(candidates.size());
final Matrix result = new Matrix(dimensions, size);
for(int i = 0; i < size; ++i) {
- final Genotype<?> genotype = genotypes.get(i);
- final Properties individual = (Properties) encoding.decode(genotype);
+ final Candidate candidate = candidates.get(i);
+ final Properties individual = candidate.searchSpaceRepresentation();
final Object [] data = individual.getValues();
@@ -245,17 +244,15 @@ public class GenerationStatisticsWriter implements StatisticsWriter {
final Object [] data = new Object[3 + functionNames.size() + (int)Math.pow(sourceSpec.size(), 2) + 2 + (int)Math.pow(sourceSpec.size(), 2) + 2 + 1];
- final Genotype<?> genotype = generationWithBestIndividual.bestPhenotype().genotype();
- final Properties individual = (Properties) encoding.decode(genotype);
+ final Candidate bestCandidate = generationWithBestIndividual.bestCandidate();
+ final Properties candidate = bestCandidate.searchSpaceRepresentation();
- data[0] = generationWithBestIndividual.generation();
- data[1] = Arrays.toString(individual.getValues());
- data[2] = generationWithBestIndividual.bestPhenotype().age(generationWithBestIndividual.generation());
-
- final Properties candidate = (Properties) encoding.decode(generationWithBestIndividual.bestPhenotype().genotype());
+ data[0] = generationWithBestIndividual.iteration();
+ data[1] = Arrays.toString(candidate.getValues());
+ data[2] = bestCandidate.age();
for(int i = 0; i < functions.size(); ++i) {
- final FitnessValue fitness = (FitnessValue) functions.get(i).apply(candidate);
+ final OptimisationValue fitness = (OptimisationValue) functions.get(i).apply(candidate);
data[3 + i] = fitness;
throw new IllegalArgumentException("fix me");
}
@@ -286,15 +283,16 @@ public class GenerationStatisticsWriter implements StatisticsWriter {
throw new IllegalStateException("We have to change the actual fitness type by looking up the correct definition.");
}
- public void add(final EvolutionResult<?, FitnessValue> evolutionResult) {
- updateBestGeneration(evolutionResult);
+ @Override
+ public void add(final IterationResult result) {
+ updateBestGeneration(result);
}
- private void updateBestGeneration(final EvolutionResult<?, FitnessValue> generation) {
+ private void updateBestGeneration(final IterationResult result) {
if(generationWithBestIndividual == null) {
- generationWithBestIndividual = generation;
- } else if(generationWithBestIndividual.bestFitness().compareTo(generation.bestFitness()) <= 0) {
- generationWithBestIndividual = generation;
+ generationWithBestIndividual = result;
+ } else if(generationWithBestIndividual.bestCandidate().value().compareTo(result.bestCandidate().value()) <= 0) {
+ generationWithBestIndividual = result;
}
}
diff --git a/src/core/de.evoal.surrogate.api/src/main/java/de/evoal/surrogate/main/statistics/ranged/GenerationStatisticsWriter.java b/src/core/de.evoal.surrogate.api/src/main/java/de/evoal/surrogate/main/statistics/ranged/GenerationStatisticsWriter.java
index 9a697ea6..38a72042 100644
--- a/src/core/de.evoal.surrogate.api/src/main/java/de/evoal/surrogate/main/statistics/ranged/GenerationStatisticsWriter.java
+++ b/src/core/de.evoal.surrogate.api/src/main/java/de/evoal/surrogate/main/statistics/ranged/GenerationStatisticsWriter.java
@@ -1,19 +1,20 @@
package de.evoal.surrogate.main.statistics.ranged;
-import de.evoal.core.api.ea.correlations.Range;
-import de.evoal.core.api.ea.fitness.comparator.FitnessValue;
import de.evoal.core.api.properties.PropertiesSpecification;
import de.evoal.core.api.properties.PropertySpecification;
import de.evoal.core.api.properties.info.PropertiesBoundaries;
import de.evoal.core.api.statistics.*;
-import de.evoal.core.api.ea.codec.CustomCodec;
-import de.evoal.core.api.properties.Properties;
-import de.evoal.core.api.ea.correlations.Correlation;
-import de.evoal.core.api.ea.correlations.Correlations;
-import de.evoal.core.api.ea.correlations.RangedCorrelation;
+import de.evoal.core.api.statistics.io.Writer;
+import de.evoal.core.api.statistics.io.WriterException;
+import de.evoal.core.api.statistics.io.WriterStrategy;
+import de.evoal.core.api.statistics.writer.Column;
+import de.evoal.core.api.statistics.writer.ColumnType;
+import de.evoal.core.api.statistics.writer.StatisticsWriter;
+import de.evoal.core.ea.api.correlations.Correlation;
+import de.evoal.core.ea.api.correlations.Correlations;
+import de.evoal.core.ea.api.correlations.RangedCorrelation;
import de.evoal.languages.model.instance.Instance;
-import io.jenetics.Genotype;
-import io.jenetics.engine.EvolutionResult;
+
import java.util.*;
import javax.annotation.PostConstruct;
import javax.enterprise.context.Dependent;
@@ -30,12 +31,6 @@ import lombok.extern.slf4j.Slf4j;
@Named("range-correlated")
@Dependent
public class GenerationStatisticsWriter implements StatisticsWriter {
- /**
- * Encoding for converting between ea and domain.
- */
- @Inject
- private CustomCodec encoding;
-
@Inject
private PropertiesBoundaries limits;
@@ -96,19 +91,19 @@ public class GenerationStatisticsWriter implements StatisticsWriter {
}
@Override
- public void add(final EvolutionResult<?, FitnessValue> evolutionResult) {
- if(evolutionResult.generation() == 1) {
- initialGenerationCubes = fillHypercubes(evolutionResult);
+ public void add(final IterationResult result) {
+ if(initialGenerationCubes == null) {
+ initialGenerationCubes = fillHypercubes(result);
}
- final List<Hypercube> currentCubes = fillHypercubes(evolutionResult);
+ final List<Hypercube> currentCubes = fillHypercubes(result);
double[] arrayOfDistances = new double[initialGenerationCubes.size()];
for(int i=0; i< arrayOfDistances.length; i++) {
arrayOfDistances[i] = currentCubes.get(i).computeSquaredDistanceToCovarianceMatrix(initialGenerationCubes.get(i));
}
Object[] data = new Object[1+ arrayOfDistances.length + 1];
- data[0] = evolutionResult.generation();
+ data[0] = result.iteration();
double sum = 0.0;
for(int i = 0; i < arrayOfDistances.length; i++) {
data[i+1] = arrayOfDistances[i];
@@ -118,23 +113,23 @@ public class GenerationStatisticsWriter implements StatisticsWriter {
try {
writer.addRecord(data);
} catch (Exception e) {
- log.error("The csv printing didn't work in generation {}", evolutionResult.generation(), e);
+ log.error("The csv printing didn't work in generation {}", result.iteration(), e);
}
}
- private List<Hypercube> fillHypercubes(final EvolutionResult<?, FitnessValue> evolutionResult){
- List<Hypercube> currentGeneration = new ArrayList<>();
+ private List<Hypercube> fillHypercubes(final IterationResult result){
+ final List<Hypercube> currentCandidates = new ArrayList<>();
+
for(int j = 0; j < hypercubeDefinitions.size(); j++) {
- Hypercube hypercube = new Hypercube(hypercubeDefinitions.get(j));
- for(int i= 0; i < evolutionResult.population().asList().size(); i++) {
- final Genotype<?> genotype = evolutionResult.population().asList().get(i).genotype();
- final Properties domainValues = (Properties) encoding.decode(genotype);
-
- hypercube.addDataPoint(domainValues);
- }
- currentGeneration.add(hypercube);
+ final Hypercube hypercube = new Hypercube(hypercubeDefinitions.get(j));
+
+ result.candidates()
+ .map(Candidate::searchSpaceRepresentation)
+ .forEach(hypercube::addDataPoint);
+
+ currentCandidates.add(hypercube);
}
- return currentGeneration;
+ return currentCandidates;
}
public void write() {
diff --git a/src/core/de.evoal.surrogate.api/src/main/java/de/evoal/surrogate/main/statistics/ranged/Hypercube.java b/src/core/de.evoal.surrogate.api/src/main/java/de/evoal/surrogate/main/statistics/ranged/Hypercube.java
index 7512c25f..5882138f 100644
--- a/src/core/de.evoal.surrogate.api/src/main/java/de/evoal/surrogate/main/statistics/ranged/Hypercube.java
+++ b/src/core/de.evoal.surrogate.api/src/main/java/de/evoal/surrogate/main/statistics/ranged/Hypercube.java
@@ -5,7 +5,7 @@ import java.util.List;
import de.evoal.core.api.properties.Properties;
-import de.evoal.core.api.ea.correlations.Range;
+import de.evoal.core.ea.api.correlations.Range;
import smile.math.matrix.Matrix;
public class Hypercube {
diff --git a/src/core/de.evoal.surrogate.api/src/main/java/de/evoal/surrogate/main/statistics/ranged/HypercubeBuilder.java b/src/core/de.evoal.surrogate.api/src/main/java/de/evoal/surrogate/main/statistics/ranged/HypercubeBuilder.java
index 183b3465..93abed2a 100644
--- a/src/core/de.evoal.surrogate.api/src/main/java/de/evoal/surrogate/main/statistics/ranged/HypercubeBuilder.java
+++ b/src/core/de.evoal.surrogate.api/src/main/java/de/evoal/surrogate/main/statistics/ranged/HypercubeBuilder.java
@@ -1,6 +1,6 @@
package de.evoal.surrogate.main.statistics.ranged;
-import de.evoal.core.api.ea.correlations.Range;
+import de.evoal.core.ea.api.correlations.Range;
import java.util.LinkedList;
import java.util.List;
diff --git a/src/core/de.evoal.surrogate.api/src/main/java/de/evoal/surrogate/main/statistics/ranged/PropertyRange.java b/src/core/de.evoal.surrogate.api/src/main/java/de/evoal/surrogate/main/statistics/ranged/PropertyRange.java
index 69410c58..8b117e35 100644
--- a/src/core/de.evoal.surrogate.api/src/main/java/de/evoal/surrogate/main/statistics/ranged/PropertyRange.java
+++ b/src/core/de.evoal.surrogate.api/src/main/java/de/evoal/surrogate/main/statistics/ranged/PropertyRange.java
@@ -1,6 +1,7 @@
package de.evoal.surrogate.main.statistics.ranged;
-import de.evoal.core.api.ea.correlations.Range;
+
+import de.evoal.core.ea.api.correlations.Range;
public class PropertyRange {
private final int indexOfChromosome;
diff --git a/src/core/de.evoal.surrogate.api/src/main/java/de/evoal/surrogate/main/statistics/surrogate/SurrogateStatistics.java b/src/core/de.evoal.surrogate.api/src/main/java/de/evoal/surrogate/main/statistics/surrogate/SurrogateStatistics.java
index fa81cf87..f1d92d06 100644
--- a/src/core/de.evoal.surrogate.api/src/main/java/de/evoal/surrogate/main/statistics/surrogate/SurrogateStatistics.java
+++ b/src/core/de.evoal.surrogate.api/src/main/java/de/evoal/surrogate/main/statistics/surrogate/SurrogateStatistics.java
@@ -3,23 +3,19 @@ package de.evoal.surrogate.main.statistics.surrogate;
import java.util.LinkedList;
import java.util.List;
-import javax.annotation.PostConstruct;
import javax.enterprise.context.Dependent;
import javax.inject.Inject;
import javax.inject.Named;
import de.evoal.core.api.statistics.*;
-import de.evoal.core.api.ea.codec.CustomCodec;
-import de.evoal.core.api.ea.fitness.comparator.FitnessValue;
import de.evoal.core.api.properties.Properties;
import de.evoal.core.api.properties.PropertiesSpecification;
-import de.evoal.languages.model.instance.Instance;
+import de.evoal.core.api.statistics.io.Writer;
+import de.evoal.core.api.statistics.io.WriterException;
+import de.evoal.core.api.statistics.writer.AbstractCandidateStatisticsWriter;
+import de.evoal.core.api.statistics.writer.Column;
+import de.evoal.core.api.statistics.writer.ColumnType;
import de.evoal.surrogate.api.function.SurrogateFunction;
-import io.jenetics.Genotype;
-import io.jenetics.Phenotype;
-import io.jenetics.engine.EvolutionResult;
-import io.jenetics.util.ISeq;
-import lombok.SneakyThrows;
import lombok.extern.slf4j.Slf4j;
/**
@@ -28,40 +24,19 @@ import lombok.extern.slf4j.Slf4j;
@Slf4j
@Named("prediction-per-individual")
@Dependent
-public class SurrogateStatistics implements StatisticsWriter {
+public class SurrogateStatistics extends AbstractCandidateStatisticsWriter {
/**
* The predictive function used.
*/
//@Inject
protected SurrogateFunction predictive;
- /**
- * Encoding for converting between ea and domain.
- */
- @Inject
- private CustomCodec encoding;
-
@Inject
@Named("surrogate-target-properties-specification")
private PropertiesSpecification targetSpecification;
- @Inject
- private WriterStrategy strategy;
-
- private Writer writer;
-
- @PostConstruct
- @SneakyThrows(WriterException.class)
- private void init() {
- createWriter();
- }
-
@Override
- public StatisticsWriter init(Instance configuration) {
- return this;
- }
-
- private void createWriter() throws WriterException {
+ protected Writer createWriter() throws WriterException {
final List<Column> columns = new LinkedList<>();
columns.add(new Column("generation", ColumnType.Integer));
@@ -71,18 +46,18 @@ public class SurrogateStatistics implements StatisticsWriter {
columns.add(new Column(targetSpecification.getProperties().get(i).name(), ColumnType.Double));
}
- writer = strategy.create("prediction-by-individual", columns);
+ return strategy.create("prediction-by-individual", columns);
}
- private Object[] dataOfPhenotype(final int index, final long generation, Phenotype<?, FitnessValue> phenotype) {
+ @Override
+ protected Object[] toData(final int index, final int iteration, final Candidate candidate) {
final Object [] data = new Object[2 + targetSpecification.size()];
- data[0] = generation;
+ data[0] = iteration;
data[1] = index;
- final Genotype<?> genotype = phenotype.genotype();
- final Properties individual = (Properties) encoding.decode(genotype);
- final Properties predicted = predictive.apply(individual);
+ final Properties representation = candidate.searchSpaceRepresentation();
+ final Properties predicted = predictive.apply(representation);
for(int i = 0; i < predicted.size(); ++i) {
data[2 + i] = predicted.getValues()[i];
@@ -90,21 +65,4 @@ public class SurrogateStatistics implements StatisticsWriter {
return data;
}
-
- @SneakyThrows(WriterException.class)
- public void add(final EvolutionResult<?, FitnessValue> evolutionResult) {
- final ISeq<Phenotype<?, FitnessValue>> population = (ISeq<Phenotype<?, FitnessValue>>)(Object)evolutionResult.population();
-
- for(int i = 0; i < population.size(); ++i) {
- writer.addRecord(dataOfPhenotype(i, evolutionResult.generation(), population.get(i)));
- }
- }
-
- public void write() {
- try {
- strategy.close(writer);
- } catch (final WriterException e) {
- log.error("Failed to write statistics:", e);
- }
- }
}
diff --git a/src/core/de.evoal.surrogate.api/src/main/java/module-info.java b/src/core/de.evoal.surrogate.api/src/main/java/module-info.java
index a4a1a87c..e93c2f8a 100644
--- a/src/core/de.evoal.surrogate.api/src/main/java/module-info.java
+++ b/src/core/de.evoal.surrogate.api/src/main/java/module-info.java
@@ -27,6 +27,7 @@ module de.evoal.surrogate.api {
requires de.evoal.languages.model.el.dsl;
requires de.evoal.languages.model.mll.dsl;
requires de.evoal.languages.model.instance;
+ requires de.evoal.core.ea;
exports de.evoal.surrogate.api;
exports de.evoal.surrogate.api.function;
diff --git a/src/core/de.evoal.surrogate.neural/src/main/java/de/evoal/surrogates/neural/NeuralNetworkConfigurator.java b/src/core/de.evoal.surrogate.neural/src/main/java/de/evoal/surrogates/neural/NeuralNetworkConfigurator.java
index d3da4e47..129262ad 100644
--- a/src/core/de.evoal.surrogate.neural/src/main/java/de/evoal/surrogates/neural/NeuralNetworkConfigurator.java
+++ b/src/core/de.evoal.surrogate.neural/src/main/java/de/evoal/surrogates/neural/NeuralNetworkConfigurator.java
@@ -94,7 +94,7 @@ public final class NeuralNetworkConfigurator {
}
private OptimizationAlgorithm optimizationAlgorithm() {
- final String name = parameter("optimization-algorithm");
+ final String name = parameter("optimisation-algorithm");
return OptimizationAlgorithm.valueOf(name);
}
diff --git a/src/core/de.evoal.surrogate.simple/pom.xml b/src/core/de.evoal.surrogate.simple/pom.xml
index d8205863..a70cdc07 100644
--- a/src/core/de.evoal.surrogate.simple/pom.xml
+++ b/src/core/de.evoal.surrogate.simple/pom.xml
@@ -7,6 +7,7 @@
<groupId>de.evoal</groupId>
<artifactId>core.plugin</artifactId>
<version>0.9.0-SNAPSHOT</version>
+ <relativePath>../de.evoal.core.plugin</relativePath>
</parent>
<artifactId>surrogate.simple</artifactId>
diff --git a/src/core/de.evoal.surrogate.svr/pom.xml b/src/core/de.evoal.surrogate.svr/pom.xml
index c4b6fef8..208fea6d 100644
--- a/src/core/de.evoal.surrogate.svr/pom.xml
+++ b/src/core/de.evoal.surrogate.svr/pom.xml
@@ -7,6 +7,7 @@
<groupId>de.evoal</groupId>
<artifactId>core.plugin</artifactId>
<version>0.9.0-SNAPSHOT</version>
+ <relativePath>../de.evoal.core.plugin</relativePath>
</parent>
<artifactId>surrogate.svr</artifactId>
--
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